Variant report

Variant	rs13166779
Chromosome Location	chr5:60795669-60795670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60627160..60629093-chr5:60795369..60797365,2	K562	blood:
2	chr5:60627396..60629093-chr5:60795369..60797520,2	K562	blood:

Variant related genes	Relation type
ENSG00000130449	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10514908	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10514909	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11741726	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11746741	0.84[AMR][1000 genomes]
rs12188685	1.00[ASN][1000 genomes]
rs13158938	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13162534	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13164700	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13165663	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13166910	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13167695	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13170519	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13174756	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13190437	0.80[ASN][1000 genomes]
rs17338553	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17340123	0.85[ASN][1000 genomes]
rs17424296	1.00[ASN][1000 genomes]
rs34993457	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35704054	0.84[AMR][1000 genomes]
rs36069847	0.84[AMR][1000 genomes]
rs62368661	0.84[AMR][1000 genomes]
rs62368664	0.84[AMR][1000 genomes]
rs66775554	0.84[EUR][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60759800-60807400	Weak transcription	Fetal Stomach	stomach
2	chr5:60760400-60807800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:60760600-60824800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:60760800-60821200	Weak transcription	Esophagus	oesophagus
5	chr5:60761000-60798000	Weak transcription	Aorta	Aorta
6	chr5:60761000-60820800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:60763800-60804400	Weak transcription	NHDF-Ad	bronchial
8	chr5:60764000-60820600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:60764800-60821000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr5:60765200-60798200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:60767400-60821200	Weak transcription	Lung	lung
12	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
13	chr5:60767600-60807000	Weak transcription	Fetal Intestine Small	intestine
14	chr5:60767600-60820800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:60768200-60818800	Weak transcription	Thymus	Thymus
16	chr5:60770800-60798600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr5:60771400-60798800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:60772000-60818400	Weak transcription	HUVEC	blood vessel
19	chr5:60772800-60796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:60773400-60815600	Weak transcription	Ovary	ovary
21	chr5:60773600-60807400	Weak transcription	Fetal Lung	lung
22	chr5:60774000-60802800	Weak transcription	NHEK	skin
23	chr5:60776600-60800800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr5:60781000-60798400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr5:60781400-60821000	Weak transcription	Fetal Kidney	kidney
26	chr5:60784400-60797600	Weak transcription	Adipose Nuclei	Adipose
27	chr5:60784800-60796200	Weak transcription	Pancreas	Pancrea
28	chr5:60785800-60797200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr5:60785800-60820800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr5:60786000-60798800	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr5:60786800-60801000	Strong transcription	HSMM	muscle
32	chr5:60787000-60820600	Weak transcription	Hela-S3	cervix
33	chr5:60788800-60807000	Weak transcription	Placenta	Placenta
34	chr5:60788800-60821800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:60789800-60796600	Strong transcription	Primary B cells from cord blood	blood
36	chr5:60790000-60798400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:60790200-60796400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:60790200-60818800	Weak transcription	Left Ventricle	heart
39	chr5:60790400-60796600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:60790600-60818800	Weak transcription	NHLF	lung
41	chr5:60791400-60821200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr5:60791400-60821400	Weak transcription	Osteobl	bone
43	chr5:60792200-60796000	Enhancers	Brain Angular Gyrus	brain
44	chr5:60792400-60799200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr5:60792400-60807400	Weak transcription	Primary T cells from cord blood	blood
46	chr5:60792400-60812800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:60792600-60796000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr5:60792600-60796200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr5:60792600-60796200	Weak transcription	Gastric	stomach
50	chr5:60792600-60796600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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