Variant report

Variant	rs12188685
Chromosome Location	chr5:60843924-60843925
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1045352	0.89[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10514908	0.92[ASN][1000 genomes]
rs10514909	0.92[ASN][1000 genomes]
rs10939905	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11741726	0.97[ASN][1000 genomes]
rs11742658	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11743711	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11747564	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11749200	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11950318	0.81[EUR][1000 genomes]
rs11952146	0.89[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12188710	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12522647	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13156100	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13157657	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13157831	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13158938	0.92[ASN][1000 genomes]
rs13159018	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13159166	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13160801	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13162534	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13162694	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13163970	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13164700	0.92[ASN][1000 genomes]
rs13165663	0.97[ASN][1000 genomes]
rs13166779	1.00[ASN][1000 genomes]
rs13166910	0.90[ASN][1000 genomes]
rs13167695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13170262	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13170519	0.97[ASN][1000 genomes]
rs13171497	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13171757	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13172080	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13172084	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13174756	0.81[ASN][1000 genomes]
rs13179091	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13179617	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13185783	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13186194	0.89[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13188685	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13190437	0.80[ASN][1000 genomes]
rs1348716	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1363892	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1445979	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1445980	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1445981	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1477355	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17338553	0.97[ASN][1000 genomes]
rs17340123	0.85[ASN][1000 genomes]
rs17424296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2034239	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2053693	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2276987	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34993457	0.92[ASN][1000 genomes]
rs55838118	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6449535	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6865624	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6873712	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6874264	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6874266	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6878927	0.89[CEU][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6882136	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6890351	0.85[CEU][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7443602	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7714457	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7717082	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7719647	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7722810	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60837800-60844000	Strong transcription	NHLF	lung
2	chr5:60839000-60850000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:60839400-60848200	Weak transcription	Fetal Heart	heart
4	chr5:60839800-60844000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:60840000-60844000	Weak transcription	Pancreas	Pancrea
6	chr5:60840000-60844200	Weak transcription	HMEC	breast
7	chr5:60840000-60844400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:60840000-60844400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:60840000-60844400	Weak transcription	Spleen	Spleen
10	chr5:60840000-60844600	Weak transcription	Aorta	Aorta
11	chr5:60840000-60844600	Weak transcription	Fetal Intestine Small	intestine
12	chr5:60840000-60844800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:60840000-60846400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:60840000-60847200	Weak transcription	Small Intestine	intestine
15	chr5:60840000-60847400	Weak transcription	Brain Substantia Nigra	brain
16	chr5:60840200-60844000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:60840200-60844000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr5:60840200-60844200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:60840200-60844200	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:60840200-60844200	Weak transcription	Gastric	stomach
21	chr5:60840200-60844400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:60840200-60844400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:60840200-60844800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr5:60840200-60845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:60840200-60846000	Weak transcription	Primary T cells from cord blood	blood
26	chr5:60840200-60847600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:60840200-60847800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:60840200-60852200	Weak transcription	Left Ventricle	heart
29	chr5:60840400-60844200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr5:60840600-60844200	Weak transcription	NHEK	skin
31	chr5:60840800-60845000	Weak transcription	NH-A	brain
32	chr5:60840800-60845200	Weak transcription	Colon Smooth Muscle	Colon
33	chr5:60840800-60845800	Weak transcription	Fetal Muscle Leg	muscle
34	chr5:60840800-60847400	Weak transcription	Brain Angular Gyrus	brain
35	chr5:60840800-60847800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr5:60841000-60844200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr5:60841000-60846200	Weak transcription	Fetal Stomach	stomach
38	chr5:60841200-60844200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr5:60841200-60844200	Weak transcription	Fetal Brain Male	brain
40	chr5:60841200-60844200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr5:60841200-60844400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr5:60841200-60844600	Weak transcription	Brain Germinal Matrix	brain
43	chr5:60841400-60844000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr5:60841400-60844200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr5:60841400-60844600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr5:60841400-60844600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr5:60842200-60844800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:60842400-60845000	Weak transcription	NHDF-Ad	bronchial
49	chr5:60842600-60844600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr5:60842800-60844400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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