Variant report

Variant	rs13174756
Chromosome Location	chr5:60749326-60749327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60749146..60750936-chr5:60757361..60759917,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10514908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10514909	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11738493	0.88[ASN][1000 genomes]
rs11741726	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11746741	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11954430	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12188685	0.81[ASN][1000 genomes]
rs13158938	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13162534	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13164700	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13165663	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13166779	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13166910	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13167695	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13168165	0.88[ASN][1000 genomes]
rs13170519	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13178686	0.88[JPT][hapmap]
rs17338553	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17424296	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs34993457	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35704054	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs36069847	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55819324	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62368661	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62368664	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7446236	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753894	chr5:60731458-60777345	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60737800-60757000	Weak transcription	Gastric	stomach
2	chr5:60739600-60750400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:60739600-60752200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:60743600-60756200	Weak transcription	Fetal Kidney	kidney
5	chr5:60744200-60751200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:60744400-60767800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:60746000-60759600	Weak transcription	Aorta	Aorta
8	chr5:60746200-60749800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:60746200-60750600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:60746200-60751000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:60746200-60751200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:60746200-60751200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:60746200-60751200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:60746200-60759800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr5:60746400-60758600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:60747000-60750600	Weak transcription	Stomach Mucosa	stomach
17	chr5:60747000-60751200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:60747000-60751200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:60747000-60751200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:60747000-60751200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:60747000-60751200	Weak transcription	Psoas Muscle	Psoas
22	chr5:60747000-60751200	Weak transcription	Right Atrium	heart
23	chr5:60747000-60751800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:60747000-60752200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr5:60747000-60752200	Weak transcription	Fetal Intestine Small	intestine
26	chr5:60747000-60752400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr5:60747000-60752400	Weak transcription	Brain Hippocampus Middle	brain
28	chr5:60747000-60757200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:60747000-60760600	Weak transcription	NHLF	lung
30	chr5:60747000-60762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:60747200-60754200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr5:60747200-60757000	Weak transcription	Small Intestine	intestine
33	chr5:60747200-60757200	Weak transcription	Left Ventricle	heart
34	chr5:60747200-60760200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:60747400-60750600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr5:60747400-60752200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:60747400-60755200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:60747600-60751200	Weak transcription	Brain Substantia Nigra	brain
39	chr5:60747600-60752200	Weak transcription	A549	lung
40	chr5:60747600-60760400	Weak transcription	NH-A	brain
41	chr5:60747600-60770600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:60747800-60751200	Weak transcription	Brain Anterior Caudate	brain
43	chr5:60747800-60757600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr5:60748000-60751200	Weak transcription	Brain Angular Gyrus	brain
45	chr5:60748000-60751200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr5:60748000-60757000	Weak transcription	Fetal Intestine Large	intestine
47	chr5:60748600-60757000	Weak transcription	HSMM	muscle
48	chr5:60748800-60757800	Weak transcription	HSMMtube	muscle
49	chr5:60749000-60762200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr5:60749200-60751200	Weak transcription	Hela-S3	cervix

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