Variant report

Variant	rs17424296
Chromosome Location	chr5:60838903-60838904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1045352	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10514908	0.92[ASN][1000 genomes]
rs10514909	0.92[ASN][1000 genomes]
rs10939905	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11741726	0.97[ASN][1000 genomes]
rs11742658	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11743711	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11747564	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11749200	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11950318	0.81[EUR][1000 genomes]
rs11952146	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12188685	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188710	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12522647	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13156100	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13157657	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13157831	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13158938	0.92[ASN][1000 genomes]
rs13159018	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13159166	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13160801	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13162534	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13162694	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13163970	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13164700	0.92[ASN][1000 genomes]
rs13165663	0.97[ASN][1000 genomes]
rs13166779	1.00[ASN][1000 genomes]
rs13166910	0.90[ASN][1000 genomes]
rs13167695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13170262	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13170519	0.97[ASN][1000 genomes]
rs13171497	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13171757	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13172080	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13172084	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13174756	0.81[ASN][1000 genomes]
rs13179091	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13179617	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13185783	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13186194	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13188685	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13190437	0.80[ASN][1000 genomes]
rs1348716	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1363892	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1445979	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1445980	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1445981	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1477355	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17338553	0.97[ASN][1000 genomes]
rs17340123	0.85[ASN][1000 genomes]
rs2034239	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2053693	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2276987	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34993457	0.92[ASN][1000 genomes]
rs55838118	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6449535	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6865624	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6873712	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6874264	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6874266	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6878927	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6882136	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6890351	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7443602	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7714457	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7717082	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7719647	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7722810	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60817800-60843800	Strong transcription	HSMM	muscle
2	chr5:60824600-60839200	Strong transcription	Fetal Intestine Large	intestine
3	chr5:60825200-60843000	Strong transcription	HSMMtube	muscle
4	chr5:60828800-60840200	Strong transcription	Fetal Muscle Trunk	muscle
5	chr5:60830600-60839800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:60830600-60841400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:60830800-60843000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:60830800-60843600	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr5:60831200-60843000	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr5:60831400-60840200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr5:60831400-60841200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:60831600-60839400	Weak transcription	HepG2	liver
13	chr5:60831600-60841200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:60832800-60839400	Strong transcription	Fetal Stomach	stomach
15	chr5:60832800-60840200	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:60833400-60840200	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:60833600-60840200	Strong transcription	HUVEC	blood vessel
18	chr5:60834200-60841200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr5:60834600-60840200	Strong transcription	Stomach Smooth Muscle	stomach
20	chr5:60834600-60840800	Strong transcription	Fetal Thymus	thymus
21	chr5:60835000-60840200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:60835000-60840800	Strong transcription	Brain Anterior Caudate	brain
23	chr5:60836400-60840000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:60836400-60841400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr5:60836800-60839000	Strong transcription	Colonic Mucosa	Colon
26	chr5:60836800-60840200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr5:60836800-60840200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr5:60836800-60841200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr5:60837000-60839200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:60837000-60842400	Strong transcription	NHDF-Ad	bronchial
31	chr5:60837200-60839000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:60837200-60839000	ZNF genes & repeats	Ovary	ovary
33	chr5:60837200-60839200	ZNF genes & repeats	Primary B cells from cord blood	blood
34	chr5:60837200-60839400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
35	chr5:60837200-60840000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr5:60837200-60840000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr5:60837200-60840200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr5:60837200-60840200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr5:60837200-60840200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:60837200-60840600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr5:60837200-60840800	Strong transcription	NH-A	brain
42	chr5:60837200-60841400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr5:60837400-60839000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
44	chr5:60837400-60839000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr5:60837400-60839200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
46	chr5:60837400-60839200	Strong transcription	Aorta	Aorta
47	chr5:60837400-60839200	Strong transcription	Esophagus	oesophagus
48	chr5:60837400-60839200	ZNF genes & repeats	Fetal Lung	lung
49	chr5:60837400-60839600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:60837400-60839600	ZNF genes & repeats	Fetal Muscle Leg	muscle

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