Variant report

Variant	rs2034239
Chromosome Location	chr5:60815767-60815768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60815230..60818108-chr5:60822916..60825567,2	K562	blood:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10041978	0.92[ASN][1000 genomes]
rs1045352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514910	0.81[CHB][hapmap]
rs10939900	0.80[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10939901	0.80[ASN][1000 genomes]
rs10939903	0.92[ASN][1000 genomes]
rs10939905	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742658	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11743711	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11747564	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11749200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950318	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11952146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954430	0.98[ASN][1000 genomes]
rs12187112	0.87[AMR][1000 genomes]
rs12188685	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12188710	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12189001	0.80[ASN][1000 genomes]
rs12518479	0.80[ASN][1000 genomes]
rs12519658	0.81[CHB][hapmap]
rs12520628	0.81[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs12522647	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13156100	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13157657	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13157831	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158413	0.97[ASN][1000 genomes]
rs13158675	0.80[ASN][1000 genomes]
rs13159018	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13159166	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13160801	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13162358	0.80[ASN][1000 genomes]
rs13162694	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13163970	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13166934	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13169711	0.80[ASN][1000 genomes]
rs13170262	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13171497	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13171757	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13172080	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13172084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178686	0.80[ASN][1000 genomes]
rs13179091	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179617	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13181015	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs13185068	1.00[ASN][1000 genomes]
rs13185783	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13186194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13188685	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348716	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1363892	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1374043	0.98[ASN][1000 genomes]
rs1445976	1.00[ASN][1000 genomes]
rs1445979	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1445980	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445981	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477355	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16892374	0.81[CHB][hapmap]
rs17424296	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1986252	0.98[ASN][1000 genomes]
rs2053693	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053694	1.00[ASN][1000 genomes]
rs2276987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610339	0.87[AMR][1000 genomes]
rs35262187	0.80[ASN][1000 genomes]
rs4276369	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs4392578	0.80[ASN][1000 genomes]
rs4484384	0.80[ASN][1000 genomes]
rs4604142	0.80[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs55838118	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56035042	0.80[ASN][1000 genomes]
rs60529601	0.80[ASN][1000 genomes]
rs60886975	0.80[ASN][1000 genomes]
rs62368660	0.80[ASN][1000 genomes]
rs6449528	0.80[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6449529	0.80[ASN][1000 genomes]
rs6449530	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs6449531	0.87[AMR][1000 genomes]
rs6449532	0.87[AMR][1000 genomes]
rs6449533	0.81[AMR][1000 genomes]
rs6449535	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66775554	1.00[ASN][1000 genomes]
rs6860608	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs6865624	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6874264	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874266	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6877610	0.81[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6878927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6879809	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6881765	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6881799	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6882136	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6885005	0.87[AMR][1000 genomes]
rs6890351	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6894675	0.87[AMR][1000 genomes]
rs6895046	0.98[ASN][1000 genomes]
rs6898746	0.99[ASN][1000 genomes]
rs7443602	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700289	0.80[ASN][1000 genomes]
rs7701440	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs7714457	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7714712	0.87[AMR][1000 genomes]
rs7717082	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7719647	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7722810	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7724551	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs7727824	0.87[AMR][1000 genomes]
rs7732234	0.98[ASN][1000 genomes]
rs7734879	0.87[AMR][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60760600-60824800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:60760800-60821200	Weak transcription	Esophagus	oesophagus
3	chr5:60761000-60820800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:60764000-60820600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:60764800-60821000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr5:60767400-60821200	Weak transcription	Lung	lung
7	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
8	chr5:60767600-60820800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:60768200-60818800	Weak transcription	Thymus	Thymus
10	chr5:60772000-60818400	Weak transcription	HUVEC	blood vessel
11	chr5:60781400-60821000	Weak transcription	Fetal Kidney	kidney
12	chr5:60785800-60820800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:60787000-60820600	Weak transcription	Hela-S3	cervix
14	chr5:60788800-60821800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr5:60790200-60818800	Weak transcription	Left Ventricle	heart
16	chr5:60790600-60818800	Weak transcription	NHLF	lung
17	chr5:60791400-60821200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:60791400-60821400	Weak transcription	Osteobl	bone
19	chr5:60792600-60821400	Weak transcription	Fetal Intestine Large	intestine
20	chr5:60792800-60820200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:60792800-60820200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr5:60792800-60821400	Weak transcription	NH-A	brain
23	chr5:60793400-60820800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr5:60793400-60821000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:60797000-60818800	Weak transcription	Pancreas	Pancrea
26	chr5:60797000-60821200	Weak transcription	Gastric	stomach
27	chr5:60797600-60818200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:60798800-60820800	Weak transcription	Aorta	Aorta
29	chr5:60800400-60818600	Weak transcription	Liver	Liver
30	chr5:60803400-60817200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:60803400-60820000	Weak transcription	HSMMtube	muscle
32	chr5:60804800-60821200	Weak transcription	NHDF-Ad	bronchial
33	chr5:60805600-60820000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:60805600-60820800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr5:60806000-60818800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr5:60807600-60820800	Weak transcription	Fetal Stomach	stomach
37	chr5:60807600-60829800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr5:60808200-60815800	Weak transcription	A549	lung
39	chr5:60808200-60817000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr5:60808200-60821600	Weak transcription	Fetal Thymus	thymus
41	chr5:60808400-60818400	Weak transcription	Primary B cells from cord blood	blood
42	chr5:60808600-60820000	Weak transcription	Brain Angular Gyrus	brain
43	chr5:60808800-60820200	Weak transcription	Primary T cells from cord blood	blood
44	chr5:60809000-60818000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr5:60809800-60817000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr5:60810600-60821000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr5:60811400-60817200	Weak transcription	Brain Substantia Nigra	brain
48	chr5:60811400-60820800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr5:60811600-60817000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:60812400-60827200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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