The 2.0 version of rSNPBase

Variant report

Variant rs2053694
Chromosome Location chr5:60807886-60807887
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60760600-60824800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr5:60760800-60821200 Weak transcription Esophagus oesophagus
3 chr5:60761000-60820800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr5:60764000-60820600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr5:60764800-60821000 Weak transcription Primary T regulatory cells fromperipheralblood blood
6 chr5:60767400-60821200 Weak transcription Lung lung
7 chr5:60767400-60837400 Weak transcription Spleen Spleen
8 chr5:60767600-60820800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr5:60768200-60818800 Weak transcription Thymus Thymus
10 chr5:60772000-60818400 Weak transcription HUVEC blood vessel
11 chr5:60773400-60815600 Weak transcription Ovary ovary
12 chr5:60781400-60821000 Weak transcription Fetal Kidney kidney
13 chr5:60785800-60820800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
14 chr5:60787000-60820600 Weak transcription Hela-S3 cervix
15 chr5:60788800-60821800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr5:60790200-60818800 Weak transcription Left Ventricle heart
17 chr5:60790600-60818800 Weak transcription NHLF lung
18 chr5:60791400-60821200 Weak transcription Primary T cells fromperipheralblood blood
19 chr5:60791400-60821400 Weak transcription Osteobl bone
20 chr5:60792400-60812800 Weak transcription Primary T helper cells fromperipheralblood blood
21 chr5:60792600-60811000 Weak transcription Psoas Muscle Psoas
22 chr5:60792600-60821400 Weak transcription Fetal Intestine Large intestine
23 chr5:60792800-60812600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr5:60792800-60820200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr5:60792800-60820200 Weak transcription Primary B cells from peripheral blood blood
26 chr5:60792800-60821400 Weak transcription NH-A brain
27 chr5:60793000-60810800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr5:60793400-60820800 Weak transcription Muscle Satellite Cultured Cells --
29 chr5:60793400-60821000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr5:60796600-60811200 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr5:60796800-60809600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr5:60796800-60812600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr5:60797000-60808200 Weak transcription Primary hematopoietic stem cells blood
34 chr5:60797000-60818800 Weak transcription Pancreas Pancrea
35 chr5:60797000-60821200 Weak transcription Gastric stomach
36 chr5:60797600-60818200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr5:60798200-60813000 Weak transcription Adipose Nuclei Adipose
38 chr5:60798600-60808200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr5:60798800-60820800 Weak transcription Aorta Aorta
40 chr5:60800400-60818600 Weak transcription Liver Liver
41 chr5:60801000-60808000 Weak transcription Brain Inferior Temporal Lobe brain
42 chr5:60802000-60809800 Strong transcription Monocytes-CD14+_RO01746 blood
43 chr5:60803400-60817200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr5:60803400-60820000 Weak transcription HSMMtube muscle
45 chr5:60803800-60811800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr5:60804000-60808400 Strong transcription Primary B cells from cord blood blood
47 chr5:60804600-60808200 Strong transcription Primary monocytes fromperipheralblood blood
48 chr5:60804600-60809000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr5:60804800-60821200 Weak transcription NHDF-Ad bronchial
50 chr5:60805400-60812400 Weak transcription HSMM muscle

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Last update: Aug 31, 2015