The 2.0 version of rSNPBase

Variant report

Variant rs13162358
Chromosome Location chr5:60685266-60685267
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60658800-60686600 Weak transcription Fetal Stomach stomach
2 chr5:60659000-60703800 Weak transcription Primary B cells from cord blood blood
3 chr5:60659200-60686600 Weak transcription Primary monocytes fromperipheralblood blood
4 chr5:60659400-60703600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr5:60659600-60697600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr5:60661800-60686800 Weak transcription Monocytes-CD14+_RO01746 blood
7 chr5:60662200-60686800 Weak transcription NHLF lung
8 chr5:60663200-60686800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr5:60663400-60690000 Weak transcription Psoas Muscle Psoas
10 chr5:60665400-60686800 Weak transcription Aorta Aorta
11 chr5:60667800-60689800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr5:60667800-60689800 Weak transcription NHEK skin
13 chr5:60675000-60686800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr5:60675400-60692800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr5:60675800-60692800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr5:60677400-60689400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr5:60679200-60686800 Weak transcription Lung lung
18 chr5:60681000-60686800 Weak transcription Spleen Spleen
19 chr5:60681200-60686000 Enhancers Brain Inferior Temporal Lobe brain
20 chr5:60681200-60704000 Weak transcription Brain Germinal Matrix brain
21 chr5:60681800-60685400 Weak transcription Placenta Amnion Placenta Amnion
22 chr5:60681800-60686800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr5:60681800-60688000 Weak transcription Fetal Muscle Trunk muscle
24 chr5:60682000-60690000 Weak transcription Adipose Nuclei Adipose
25 chr5:60682000-60709800 Weak transcription Left Ventricle heart
26 chr5:60682200-60686600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr5:60682200-60686800 Weak transcription Gastric stomach
28 chr5:60682200-60687000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr5:60682200-60687200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr5:60682200-60690000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr5:60682200-60695600 Weak transcription HUES64 Cell Line embryonic stem cell
32 chr5:60682400-60686800 Weak transcription Pancreas Pancrea
33 chr5:60682400-60688200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr5:60682400-60695800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr5:60682400-60697800 Weak transcription Fetal Kidney kidney
36 chr5:60682400-60698800 Weak transcription Small Intestine intestine
37 chr5:60682600-60685400 Weak transcription Fetal Lung lung
38 chr5:60682600-60686600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr5:60682600-60686800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr5:60682600-60686800 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr5:60682600-60690000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr5:60682600-60690000 Weak transcription Right Ventricle heart
43 chr5:60682600-60695800 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr5:60682600-60703600 Weak transcription Rectal Smooth Muscle rectum
45 chr5:60682600-60704200 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr5:60682600-60712400 Weak transcription Esophagus oesophagus
47 chr5:60682800-60686800 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr5:60682800-60686800 Weak transcription Fetal Brain Female brain
49 chr5:60682800-60686800 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr5:60682800-60686800 Weak transcription HSMM muscle

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Last update: Aug 31, 2015