The 2.0 version of rSNPBase

Variant report

Variant rs12188627
Chromosome Location chr5:60720682-60720683
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60698000-60725400 Weak transcription Spleen Spleen
2 chr5:60705200-60727200 Weak transcription Fetal Stomach stomach
3 chr5:60706000-60721400 Weak transcription Fetal Intestine Large intestine
4 chr5:60706000-60728000 Weak transcription Fetal Intestine Small intestine
5 chr5:60706200-60727800 Weak transcription HUVEC blood vessel
6 chr5:60711000-60735800 Weak transcription Monocytes-CD14+_RO01746 blood
7 chr5:60712600-60727600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr5:60712800-60721200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr5:60712800-60725400 Weak transcription Pancreas Pancrea
10 chr5:60713400-60732800 Weak transcription Small Intestine intestine
11 chr5:60713800-60724400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr5:60714000-60725000 Weak transcription H1 Cell Line embryonic stem cell
13 chr5:60714000-60725200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr5:60714000-60725600 Weak transcription Stomach Mucosa stomach
15 chr5:60714000-60727800 Weak transcription Brain Germinal Matrix brain
16 chr5:60716400-60721400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr5:60717200-60726200 Weak transcription Primary B cells from cord blood blood
18 chr5:60717400-60724800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr5:60719000-60721200 Enhancers Fetal Brain Male brain
20 chr5:60719000-60722000 Enhancers Brain Cingulate Gyrus brain
21 chr5:60719200-60721000 Enhancers Ovary ovary
22 chr5:60719200-60721800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
23 chr5:60719200-60722400 Enhancers Fetal Heart heart
24 chr5:60719200-60723600 Enhancers Brain Angular Gyrus brain
25 chr5:60719200-60729400 Weak transcription Fetal Muscle Trunk muscle
26 chr5:60719400-60721800 Enhancers Breast Myoepithelial Primary Cells Breast
27 chr5:60719600-60720800 Enhancers Left Ventricle heart
28 chr5:60719600-60726600 Weak transcription Thymus Thymus
29 chr5:60719800-60721000 Weak transcription Hela-S3 cervix
30 chr5:60719800-60724600 Weak transcription iPS-20b Cell Line embryonic stem cell
31 chr5:60719800-60724600 Weak transcription Liver Liver
32 chr5:60719800-60725400 Weak transcription Fetal Kidney kidney
33 chr5:60719800-60745200 Weak transcription NHDF-Ad bronchial
34 chr5:60720000-60721000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
35 chr5:60720000-60721000 Weak transcription HSMM muscle
36 chr5:60720000-60721200 Weak transcription Primary T killer naive cells fromperipheralblood blood
37 chr5:60720000-60721200 Weak transcription Osteobl bone
38 chr5:60720000-60721400 Enhancers Brain Inferior Temporal Lobe brain
39 chr5:60720000-60721400 Enhancers Duodenum Smooth Muscle Duodenum
40 chr5:60720000-60721400 Weak transcription Right Ventricle heart
41 chr5:60720000-60721400 Enhancers A549 lung
42 chr5:60720000-60721600 Weak transcription Muscle Satellite Cultured Cells --
43 chr5:60720000-60721800 Enhancers Colon Smooth Muscle Colon
44 chr5:60720000-60722000 Enhancers Brain Anterior Caudate brain
45 chr5:60720000-60722000 Enhancers Brain Hippocampus Middle brain
46 chr5:60720000-60724200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr5:60720000-60724600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr5:60720000-60725000 Weak transcription H9 Cell Line embryonic stem cell
49 chr5:60720000-60725000 Weak transcription HUES6 Cell Line embryonic stem cell
50 chr5:60720000-60725000 Weak transcription Gastric stomach

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Last update: Aug 31, 2015