Variant report

Variant rs10939902
Chromosome Location chr5:60727990-60727991
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60706000-60728000 Weak transcription Fetal Intestine Small intestine
2 chr5:60711000-60735800 Weak transcription Monocytes-CD14+_RO01746 blood
3 chr5:60713400-60732800 Weak transcription Small Intestine intestine
4 chr5:60719200-60729400 Weak transcription Fetal Muscle Trunk muscle
5 chr5:60719800-60745200 Weak transcription NHDF-Ad bronchial
6 chr5:60720000-60733800 Weak transcription NHLF lung
7 chr5:60720000-60736400 Weak transcription Primary hematopoietic stem cells blood
8 chr5:60720000-60737400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr5:60720400-60728200 Weak transcription Fetal Muscle Leg muscle
10 chr5:60720400-60734000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr5:60720600-60743200 Weak transcription HSMMtube muscle
12 chr5:60721000-60733000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr5:60721600-60728000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr5:60721800-60728200 Weak transcription Right Ventricle heart
15 chr5:60725600-60728000 Enhancers Brain Substantia Nigra brain
16 chr5:60725600-60728000 Weak transcription Rectal Smooth Muscle rectum
17 chr5:60725600-60732600 Weak transcription Fetal Heart heart
18 chr5:60725600-60737400 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr5:60725800-60728000 Weak transcription H9 Cell Line embryonic stem cell
20 chr5:60725800-60728000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr5:60725800-60732800 Weak transcription Esophagus oesophagus
22 chr5:60725800-60732800 Weak transcription Pancreas Pancrea
23 chr5:60726000-60728000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr5:60726000-60728000 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr5:60726000-60728000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr5:60726000-60728000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr5:60726000-60729200 Weak transcription Gastric stomach
28 chr5:60726000-60730800 Weak transcription Fetal Brain Female brain
29 chr5:60726000-60732800 Weak transcription Left Ventricle heart
30 chr5:60726000-60732800 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr5:60726000-60733800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr5:60726000-60736600 Weak transcription Right Atrium heart
33 chr5:60726600-60728000 Weak transcription Brain Inferior Temporal Lobe brain
34 chr5:60726800-60728000 Weak transcription Brain Angular Gyrus brain
35 chr5:60726800-60728000 Weak transcription Brain Anterior Caudate brain
36 chr5:60726800-60728000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr5:60726800-60745600 Weak transcription Stomach Mucosa stomach
38 chr5:60727000-60732000 Weak transcription Liver Liver
39 chr5:60727200-60728600 Enhancers Fetal Stomach stomach
40 chr5:60727200-60729000 Enhancers Breast Myoepithelial Primary Cells Breast
41 chr5:60727400-60728000 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
42 chr5:60727600-60728000 Enhancers Brain Cingulate Gyrus brain
43 chr5:60727600-60728400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
44 chr5:60727600-60728400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr5:60727600-60728400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr5:60727600-60728600 Enhancers iPS-15b Cell Line embryonic stem cell
47 chr5:60727600-60728600 Enhancers iPS-20b Cell Line embryonic stem cell
48 chr5:60727600-60728600 Enhancers HMEC breast
49 chr5:60727600-60728800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
50 chr5:60727800-60728000 Active TSS Brain Hippocampus Middle brain

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