The 2.0 version of rSNPBase

Variant report

Variant rs10041978
Chromosome Location chr5:60742205-60742206
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60719800-60745200 Weak transcription NHDF-Ad bronchial
2 chr5:60720600-60743200 Weak transcription HSMMtube muscle
3 chr5:60726800-60745600 Weak transcription Stomach Mucosa stomach
4 chr5:60728400-60745400 Weak transcription Ovary ovary
5 chr5:60732600-60743000 Weak transcription Aorta Aorta
6 chr5:60733000-60745600 Weak transcription Psoas Muscle Psoas
7 chr5:60733400-60745200 Weak transcription Pancreas Pancrea
8 chr5:60733400-60745400 Weak transcription Esophagus oesophagus
9 chr5:60733400-60746800 Weak transcription Left Ventricle heart
10 chr5:60734600-60745200 Weak transcription Osteobl bone
11 chr5:60735200-60745400 Weak transcription Muscle Satellite Cultured Cells --
12 chr5:60737600-60745200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr5:60737800-60744600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr5:60737800-60745400 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr5:60737800-60745600 Weak transcription Fetal Stomach stomach
16 chr5:60737800-60757000 Weak transcription Gastric stomach
17 chr5:60738600-60743200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr5:60739000-60742800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr5:60739000-60745400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr5:60739200-60742600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr5:60739200-60742600 Weak transcription Primary T cells from cord blood blood
22 chr5:60739200-60743400 Weak transcription Fetal Lung lung
23 chr5:60739200-60743600 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr5:60739200-60745800 Weak transcription Placenta Amnion Placenta Amnion
25 chr5:60739600-60742400 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr5:60739600-60742600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr5:60739600-60750400 Weak transcription H1 Cell Line embryonic stem cell
28 chr5:60739600-60752200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr5:60739800-60743400 Weak transcription NH-A brain
30 chr5:60739800-60745400 Weak transcription HUVEC blood vessel
31 chr5:60740400-60745000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr5:60740600-60744200 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr5:60740600-60747600 Enhancers Brain Substantia Nigra brain
34 chr5:60740800-60743400 Strong transcription HSMM muscle
35 chr5:60741200-60742800 Weak transcription A549 lung
36 chr5:60741200-60746800 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr5:60741400-60742600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr5:60741400-60743200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr5:60741400-60745400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr5:60741400-60747000 Enhancers Brain Cingulate Gyrus brain
41 chr5:60741600-60742600 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr5:60741600-60742600 Weak transcription Monocytes-CD14+_RO01746 blood
43 chr5:60741600-60744000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr5:60741600-60744200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr5:60741600-60747000 Enhancers Brain Hippocampus Middle brain
46 chr5:60741800-60742800 Weak transcription Colon Smooth Muscle Colon
47 chr5:60741800-60743200 Weak transcription Duodenum Mucosa Duodenum
48 chr5:60741800-60743400 Weak transcription NHLF lung
49 chr5:60741800-60743600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
50 chr5:60741800-60748000 Enhancers Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015