Variant report

Variant	rs11749200
Chromosome Location	chr5:60831581-60831582
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60829030..60831776-chr5:60833318..60835035,2	K562	blood:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10041978	0.92[ASN][1000 genomes]
rs1045352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514910	0.81[CHB][hapmap]
rs10939900	0.80[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10939901	0.80[ASN][1000 genomes]
rs10939903	0.92[ASN][1000 genomes]
rs10939905	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742658	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11743711	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11747564	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11950318	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11952146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954430	0.98[ASN][1000 genomes]
rs12187112	0.88[AMR][1000 genomes]
rs12188685	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12188710	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12189001	0.80[ASN][1000 genomes]
rs12518479	0.80[ASN][1000 genomes]
rs12519658	0.81[CHB][hapmap]
rs12520628	0.81[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs12522647	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13156100	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13157657	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13157831	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158413	0.97[ASN][1000 genomes]
rs13158675	0.80[ASN][1000 genomes]
rs13159018	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13159166	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13160801	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13162358	0.80[ASN][1000 genomes]
rs13162694	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13163970	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13166934	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13169711	0.80[ASN][1000 genomes]
rs13170262	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13171497	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13171757	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13172080	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13172084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178686	0.80[ASN][1000 genomes]
rs13179091	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179617	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13181015	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs13185068	1.00[ASN][1000 genomes]
rs13185783	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13186194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13188685	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348716	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1363892	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1374043	0.98[ASN][1000 genomes]
rs1445976	1.00[ASN][1000 genomes]
rs1445979	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1445980	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445981	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477355	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16892374	0.81[CHB][hapmap]
rs17424296	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1986252	0.98[ASN][1000 genomes]
rs2034239	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053693	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053694	1.00[ASN][1000 genomes]
rs2276987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610339	0.88[AMR][1000 genomes]
rs35262187	0.80[ASN][1000 genomes]
rs4392578	0.80[ASN][1000 genomes]
rs4484384	0.80[ASN][1000 genomes]
rs4604142	0.80[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs55838118	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56035042	0.80[ASN][1000 genomes]
rs60529601	0.80[ASN][1000 genomes]
rs60886975	0.80[ASN][1000 genomes]
rs62368660	0.80[ASN][1000 genomes]
rs6449528	0.80[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6449529	0.80[ASN][1000 genomes]
rs6449530	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs6449531	0.88[AMR][1000 genomes]
rs6449532	0.88[AMR][1000 genomes]
rs6449533	0.82[AMR][1000 genomes]
rs6449535	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66775554	1.00[ASN][1000 genomes]
rs6860608	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs6865624	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6874264	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874266	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6877610	0.81[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6878927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6879809	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6881765	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6881799	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6882136	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6885005	0.88[AMR][1000 genomes]
rs6890351	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6894675	0.88[AMR][1000 genomes]
rs6895046	0.98[ASN][1000 genomes]
rs6898746	0.99[ASN][1000 genomes]
rs7443602	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700289	0.80[ASN][1000 genomes]
rs7714457	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7714712	0.88[AMR][1000 genomes]
rs7717082	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7719647	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7722810	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7724551	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs7727824	0.88[AMR][1000 genomes]
rs7732234	0.98[ASN][1000 genomes]
rs7734879	0.88[AMR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
2	chr5:60815400-60833000	Weak transcription	Fetal Brain Male	brain
3	chr5:60815800-60833000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:60815800-60837200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:60816000-60837800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:60817000-60837000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr5:60817000-60837400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr5:60817800-60843800	Strong transcription	HSMM	muscle
9	chr5:60818000-60838000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:60818800-60837800	Weak transcription	Fetal Heart	heart
11	chr5:60819000-60837400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:60819000-60837800	Weak transcription	Small Intestine	intestine
13	chr5:60819200-60837800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:60819600-60837000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:60819600-60837600	Weak transcription	Brain Germinal Matrix	brain
16	chr5:60819800-60832400	Weak transcription	HMEC	breast
17	chr5:60821600-60834400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:60821800-60833000	Weak transcription	Stomach Mucosa	stomach
19	chr5:60821800-60835200	Weak transcription	Gastric	stomach
20	chr5:60821800-60836800	Weak transcription	Colonic Mucosa	Colon
21	chr5:60822000-60833800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:60822000-60834400	Weak transcription	Thymus	Thymus
23	chr5:60822200-60835000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:60822200-60837800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr5:60822600-60837200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:60822800-60835000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr5:60823000-60834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:60824400-60837800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:60824600-60839200	Strong transcription	Fetal Intestine Large	intestine
30	chr5:60824800-60838000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:60825000-60834600	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr5:60825200-60836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:60825200-60843000	Strong transcription	HSMMtube	muscle
34	chr5:60825600-60834400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr5:60826400-60837200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr5:60826400-60838000	Weak transcription	Psoas Muscle	Psoas
37	chr5:60826600-60833600	Weak transcription	Fetal Brain Female	brain
38	chr5:60826800-60832800	Weak transcription	Fetal Stomach	stomach
39	chr5:60826800-60836800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:60827600-60834600	Weak transcription	Fetal Thymus	thymus
41	chr5:60827600-60835400	Weak transcription	Right Ventricle	heart
42	chr5:60827800-60834400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr5:60828400-60835200	Weak transcription	Colon Smooth Muscle	Colon
44	chr5:60828600-60833200	Weak transcription	Placenta	Placenta
45	chr5:60828800-60840200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr5:60829200-60833000	Weak transcription	Brain Hippocampus Middle	brain
47	chr5:60829400-60837800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr5:60829400-60838600	Strong transcription	Osteobl	bone
49	chr5:60829600-60832600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr5:60829600-60834400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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