Variant report

Variant	rs16892374
Chromosome Location	chr5:60839907-60839908
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1045352	0.81[CHB][hapmap]
rs10514910	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11749200	0.81[CHB][hapmap]
rs11952146	0.81[CHB][hapmap]
rs12517679	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12519658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520195	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12521592	0.83[EUR][1000 genomes]
rs13172084	0.81[CHB][hapmap]
rs13186194	0.81[CHB][hapmap]
rs16891822	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16891983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35102220	0.81[ASN][1000 genomes]
rs4590138	0.85[ASN][1000 genomes]
rs56885035	0.85[ASN][1000 genomes]
rs57709834	0.85[ASN][1000 genomes]
rs61431275	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6873712	0.81[CHB][hapmap]
rs6878927	0.81[CHB][hapmap]
rs6879809	0.81[CHB][hapmap]
rs6890351	0.81[CHB][hapmap]
rs6893130	0.85[ASN][1000 genomes]
rs73107409	0.85[ASN][1000 genomes]
rs7445500	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60817800-60843800	Strong transcription	HSMM	muscle
2	chr5:60825200-60843000	Strong transcription	HSMMtube	muscle
3	chr5:60828800-60840200	Strong transcription	Fetal Muscle Trunk	muscle
4	chr5:60830600-60841400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:60830800-60843000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:60830800-60843600	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr5:60831200-60843000	Strong transcription	Muscle Satellite Cultured Cells	--
8	chr5:60831400-60840200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:60831400-60841200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:60831600-60841200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:60832800-60840200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr5:60833400-60840200	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:60833600-60840200	Strong transcription	HUVEC	blood vessel
14	chr5:60834200-60841200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr5:60834600-60840200	Strong transcription	Stomach Smooth Muscle	stomach
16	chr5:60834600-60840800	Strong transcription	Fetal Thymus	thymus
17	chr5:60835000-60840200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr5:60835000-60840800	Strong transcription	Brain Anterior Caudate	brain
19	chr5:60836400-60840000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:60836400-60841400	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr5:60836800-60840200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:60836800-60840200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:60836800-60841200	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr5:60837000-60842400	Strong transcription	NHDF-Ad	bronchial
25	chr5:60837200-60840000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr5:60837200-60840000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr5:60837200-60840200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr5:60837200-60840200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:60837200-60840200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr5:60837200-60840600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:60837200-60840800	Strong transcription	NH-A	brain
32	chr5:60837200-60841400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:60837400-60840000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:60837400-60840000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
35	chr5:60837400-60840000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:60837400-60840000	Strong transcription	Brain Substantia Nigra	brain
37	chr5:60837400-60840000	ZNF genes & repeats	Fetal Intestine Small	intestine
38	chr5:60837400-60840000	Strong transcription	HMEC	breast
39	chr5:60837400-60840200	Strong transcription	Gastric	stomach
40	chr5:60837400-60840200	ZNF genes & repeats	Lung	lung
41	chr5:60837400-60841400	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr5:60837400-60843000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:60837600-60840000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
44	chr5:60837600-60840000	ZNF genes & repeats	A549	lung
45	chr5:60837600-60840200	ZNF genes & repeats	Dnd41	blood
46	chr5:60837600-60840800	Strong transcription	Brain Angular Gyrus	brain
47	chr5:60837600-60841200	Strong transcription	Rectal Smooth Muscle	rectum
48	chr5:60837800-60840000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr5:60837800-60840000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr5:60837800-60840000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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