Variant report

Variant	rs16891983
Chromosome Location	chr5:60806765-60806766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1045352	0.81[CHB][hapmap]
rs10514910	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11749200	0.81[CHB][hapmap]
rs11952146	0.81[CHB][hapmap]
rs12517679	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12519658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12520195	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12521592	0.83[EUR][1000 genomes]
rs13172084	0.81[CHB][hapmap]
rs13186194	0.81[CHB][hapmap]
rs16891822	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35102220	0.83[ASN][1000 genomes]
rs35432189	0.82[ASN][1000 genomes]
rs4590138	0.85[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs56885035	0.86[ASN][1000 genomes]
rs57709834	0.86[ASN][1000 genomes]
rs61431275	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6873712	0.81[CHB][hapmap]
rs6878927	0.81[CHB][hapmap]
rs6879809	0.81[CHB][hapmap]
rs6890351	0.81[CHB][hapmap]
rs6893130	0.86[ASN][1000 genomes]
rs73107409	0.86[ASN][1000 genomes]
rs7445500	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16891983	SLC16A3	trans	brain	seeQTL

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60759800-60807400	Weak transcription	Fetal Stomach	stomach
2	chr5:60760400-60807800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:60760600-60824800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:60760800-60821200	Weak transcription	Esophagus	oesophagus
5	chr5:60761000-60820800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:60764000-60820600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:60764800-60821000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:60767400-60821200	Weak transcription	Lung	lung
9	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
10	chr5:60767600-60807000	Weak transcription	Fetal Intestine Small	intestine
11	chr5:60767600-60820800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:60768200-60818800	Weak transcription	Thymus	Thymus
13	chr5:60772000-60818400	Weak transcription	HUVEC	blood vessel
14	chr5:60773400-60815600	Weak transcription	Ovary	ovary
15	chr5:60773600-60807400	Weak transcription	Fetal Lung	lung
16	chr5:60781400-60821000	Weak transcription	Fetal Kidney	kidney
17	chr5:60785800-60820800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:60787000-60820600	Weak transcription	Hela-S3	cervix
19	chr5:60788800-60807000	Weak transcription	Placenta	Placenta
20	chr5:60788800-60821800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:60790200-60818800	Weak transcription	Left Ventricle	heart
22	chr5:60790600-60818800	Weak transcription	NHLF	lung
23	chr5:60791400-60821200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr5:60791400-60821400	Weak transcription	Osteobl	bone
25	chr5:60792400-60807400	Weak transcription	Primary T cells from cord blood	blood
26	chr5:60792400-60812800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:60792600-60811000	Weak transcription	Psoas Muscle	Psoas
28	chr5:60792600-60821400	Weak transcription	Fetal Intestine Large	intestine
29	chr5:60792800-60812600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:60792800-60820200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:60792800-60820200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr5:60792800-60821400	Weak transcription	NH-A	brain
33	chr5:60793000-60810800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr5:60793400-60820800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr5:60793400-60821000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr5:60794000-60807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr5:60796600-60811200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr5:60796800-60809600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr5:60796800-60812600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:60797000-60808200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr5:60797000-60818800	Weak transcription	Pancreas	Pancrea
42	chr5:60797000-60821200	Weak transcription	Gastric	stomach
43	chr5:60797600-60818200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr5:60798200-60813000	Weak transcription	Adipose Nuclei	Adipose
45	chr5:60798600-60808200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr5:60798800-60820800	Weak transcription	Aorta	Aorta
47	chr5:60799400-60807200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr5:60800400-60818600	Weak transcription	Liver	Liver
49	chr5:60801000-60808000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr5:60802000-60809800	Strong transcription	Monocytes-CD14+_RO01746	blood

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