Variant report

Variant	rs16892307
Chromosome Location	chr5:60830916-60830917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60829030..60831776-chr5:60833318..60835035,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1045352	0.81[CHB][hapmap]
rs10514910	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952146	0.81[CHB][hapmap]
rs12517679	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12519658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520195	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12521592	0.83[EUR][1000 genomes]
rs13186194	0.81[CHB][hapmap]
rs16891822	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16891983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35102220	0.81[ASN][1000 genomes]
rs4590138	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs56885035	0.85[ASN][1000 genomes]
rs57709834	0.85[ASN][1000 genomes]
rs61431275	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6878927	0.81[CHB][hapmap]
rs6893130	0.85[ASN][1000 genomes]
rs73107409	0.85[ASN][1000 genomes]
rs7445500	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
2	chr5:60815400-60833000	Weak transcription	Fetal Brain Male	brain
3	chr5:60815800-60833000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:60815800-60837200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:60816000-60831200	Weak transcription	Ovary	ovary
6	chr5:60816000-60837800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:60817000-60837000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:60817000-60837400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:60817800-60843800	Strong transcription	HSMM	muscle
10	chr5:60818000-60838000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:60818800-60837800	Weak transcription	Fetal Heart	heart
12	chr5:60819000-60837400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:60819000-60837800	Weak transcription	Small Intestine	intestine
14	chr5:60819200-60837800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:60819600-60837000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr5:60819600-60837600	Weak transcription	Brain Germinal Matrix	brain
17	chr5:60819800-60832400	Weak transcription	HMEC	breast
18	chr5:60821600-60834400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:60821800-60831400	Weak transcription	NHEK	skin
20	chr5:60821800-60833000	Weak transcription	Stomach Mucosa	stomach
21	chr5:60821800-60835200	Weak transcription	Gastric	stomach
22	chr5:60821800-60836800	Weak transcription	Colonic Mucosa	Colon
23	chr5:60822000-60833800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:60822000-60834400	Weak transcription	Thymus	Thymus
25	chr5:60822200-60831000	Weak transcription	Lung	lung
26	chr5:60822200-60831400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr5:60822200-60835000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:60822200-60837800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr5:60822600-60837200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr5:60822800-60835000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr5:60823000-60834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr5:60823600-60831400	Weak transcription	Brain Angular Gyrus	brain
33	chr5:60824400-60837800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:60824600-60839200	Strong transcription	Fetal Intestine Large	intestine
35	chr5:60824800-60838000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:60825000-60834600	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr5:60825200-60836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr5:60825200-60843000	Strong transcription	HSMMtube	muscle
39	chr5:60825600-60834400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr5:60826400-60837200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr5:60826400-60838000	Weak transcription	Psoas Muscle	Psoas
42	chr5:60826600-60831400	Weak transcription	Hela-S3	cervix
43	chr5:60826600-60833600	Weak transcription	Fetal Brain Female	brain
44	chr5:60826800-60832800	Weak transcription	Fetal Stomach	stomach
45	chr5:60826800-60836800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:60827600-60831400	Weak transcription	Brain Substantia Nigra	brain
47	chr5:60827600-60834600	Weak transcription	Fetal Thymus	thymus
48	chr5:60827600-60835400	Weak transcription	Right Ventricle	heart
49	chr5:60827800-60831400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr5:60827800-60834400	Weak transcription	Brain Inferior Temporal Lobe	brain

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