Variant report

Variant	rs16891822
Chromosome Location	chr5:60790905-60790906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10514910	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12517679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12519658	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12520195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12521592	0.83[EUR][1000 genomes]
rs16891983	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892286	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892307	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892374	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35102220	0.83[ASN][1000 genomes]
rs35432189	0.82[ASN][1000 genomes]
rs4590138	0.86[ASN][1000 genomes]
rs56885035	0.86[ASN][1000 genomes]
rs57709834	0.86[ASN][1000 genomes]
rs61431275	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6893130	0.86[ASN][1000 genomes]
rs73107409	0.86[ASN][1000 genomes]
rs7445500	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60759800-60807400	Weak transcription	Fetal Stomach	stomach
2	chr5:60760400-60807800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:60760600-60824800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:60760800-60821200	Weak transcription	Esophagus	oesophagus
5	chr5:60761000-60798000	Weak transcription	Aorta	Aorta
6	chr5:60761000-60820800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:60763800-60792000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:60763800-60792400	Weak transcription	HMEC	breast
9	chr5:60763800-60804400	Weak transcription	NHDF-Ad	bronchial
10	chr5:60764000-60820600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:60764600-60792200	Weak transcription	NH-A	brain
12	chr5:60764800-60792400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:60764800-60821000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:60765200-60798200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr5:60766000-60792600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:60767400-60792400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:60767400-60821200	Weak transcription	Lung	lung
18	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
19	chr5:60767600-60791000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr5:60767600-60807000	Weak transcription	Fetal Intestine Small	intestine
21	chr5:60767600-60820800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:60768200-60818800	Weak transcription	Thymus	Thymus
23	chr5:60768600-60793000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:60770400-60792200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:60770800-60798600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr5:60771000-60791000	Weak transcription	Fetal Thymus	thymus
27	chr5:60771400-60798800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:60772000-60818400	Weak transcription	HUVEC	blood vessel
29	chr5:60772800-60796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:60773400-60815600	Weak transcription	Ovary	ovary
31	chr5:60773600-60795000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr5:60773600-60807400	Weak transcription	Fetal Lung	lung
33	chr5:60774000-60802800	Weak transcription	NHEK	skin
34	chr5:60775600-60792000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:60775800-60792600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr5:60776400-60791200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr5:60776600-60800800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr5:60776800-60792400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr5:60777400-60792200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr5:60777400-60792600	Weak transcription	Liver	Liver
41	chr5:60781000-60798400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr5:60781400-60792200	Weak transcription	Psoas Muscle	Psoas
43	chr5:60781400-60821000	Weak transcription	Fetal Kidney	kidney
44	chr5:60781600-60791400	Weak transcription	A549	lung
45	chr5:60782000-60791800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr5:60784400-60797600	Weak transcription	Adipose Nuclei	Adipose
47	chr5:60784800-60796200	Weak transcription	Pancreas	Pancrea
48	chr5:60785800-60792000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:60785800-60797200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:60785800-60820800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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