The 2.0 version of rSNPBase

Variant report

Variant rs73107409
Chromosome Location chr5:60679405-60679406
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60653800-60681200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr5:60654000-60681400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr5:60658800-60686600 Weak transcription Fetal Stomach stomach
4 chr5:60659000-60681600 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr5:60659000-60703800 Weak transcription Primary B cells from cord blood blood
6 chr5:60659200-60686600 Weak transcription Primary monocytes fromperipheralblood blood
7 chr5:60659400-60703600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr5:60659600-60697600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr5:60660200-60681600 Weak transcription HSMM muscle
10 chr5:60661800-60686800 Weak transcription Monocytes-CD14+_RO01746 blood
11 chr5:60662200-60686800 Weak transcription NHLF lung
12 chr5:60663200-60686800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr5:60663400-60690000 Weak transcription Psoas Muscle Psoas
14 chr5:60665400-60686800 Weak transcription Aorta Aorta
15 chr5:60665600-60681600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr5:60667600-60681600 Weak transcription Duodenum Mucosa Duodenum
17 chr5:60667800-60689800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr5:60667800-60689800 Weak transcription NHEK skin
19 chr5:60668600-60680800 Weak transcription Brain Hippocampus Middle brain
20 chr5:60668600-60681400 Weak transcription Fetal Intestine Small intestine
21 chr5:60675000-60680800 Weak transcription Spleen Spleen
22 chr5:60675000-60681600 Weak transcription Pancreas Pancrea
23 chr5:60675000-60686800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr5:60675200-60680000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr5:60675400-60692800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr5:60675600-60681200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr5:60675800-60681400 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr5:60675800-60681400 Weak transcription A549 lung
29 chr5:60675800-60692800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr5:60676400-60681200 Weak transcription iPS-18 Cell Line embryonic stem cell
31 chr5:60676600-60681400 Weak transcription iPS-15b Cell Line embryonic stem cell
32 chr5:60676600-60681600 Weak transcription Esophagus oesophagus
33 chr5:60677200-60681400 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr5:60677400-60689400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr5:60677600-60681200 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr5:60677600-60681200 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr5:60677600-60681400 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr5:60677600-60682000 Weak transcription Muscle Satellite Cultured Cells --
39 chr5:60678000-60681000 Weak transcription Small Intestine intestine
40 chr5:60678000-60681200 Weak transcription Brain Angular Gyrus brain
41 chr5:60678000-60681200 Weak transcription Brain Cingulate Gyrus brain
42 chr5:60678000-60681200 Weak transcription Brain Substantia Nigra brain
43 chr5:60678200-60681200 Weak transcription Brain Inferior Temporal Lobe brain
44 chr5:60679200-60680200 Weak transcription Brain Anterior Caudate brain
45 chr5:60679200-60686800 Weak transcription Lung lung

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Last update: Aug 31, 2015