Variant report

Variant	rs12188710
Chromosome Location	chr5:60844213-60844214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1045352	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10939905	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11742658	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11743711	0.81[EUR][1000 genomes]
rs11747564	0.80[AMR][1000 genomes]
rs11749200	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11952146	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12188685	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12522647	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13156100	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13157657	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13157831	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13159018	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13159166	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13160801	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13162694	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13163970	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13170262	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13171497	0.81[AMR][1000 genomes]
rs13171757	0.81[EUR][1000 genomes]
rs13172080	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13172084	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13179091	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13179617	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13185783	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13186194	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13188685	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1348716	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1363892	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1445979	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1445980	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1445981	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1477355	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17424296	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2034239	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2053693	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2276987	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55838118	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6449535	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6865624	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6873712	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6874264	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6874266	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6878927	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6882136	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6890351	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7443602	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7714457	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7717082	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7719647	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7722810	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60839000-60850000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60839400-60848200	Weak transcription	Fetal Heart	heart
3	chr5:60840000-60844400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:60840000-60844400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:60840000-60844400	Weak transcription	Spleen	Spleen
6	chr5:60840000-60844600	Weak transcription	Aorta	Aorta
7	chr5:60840000-60844600	Weak transcription	Fetal Intestine Small	intestine
8	chr5:60840000-60844800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:60840000-60846400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:60840000-60847200	Weak transcription	Small Intestine	intestine
11	chr5:60840000-60847400	Weak transcription	Brain Substantia Nigra	brain
12	chr5:60840200-60844400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:60840200-60844400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr5:60840200-60844800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr5:60840200-60845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:60840200-60846000	Weak transcription	Primary T cells from cord blood	blood
17	chr5:60840200-60847600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:60840200-60847800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:60840200-60852200	Weak transcription	Left Ventricle	heart
20	chr5:60840800-60845000	Weak transcription	NH-A	brain
21	chr5:60840800-60845200	Weak transcription	Colon Smooth Muscle	Colon
22	chr5:60840800-60845800	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:60840800-60847400	Weak transcription	Brain Angular Gyrus	brain
24	chr5:60840800-60847800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr5:60841000-60846200	Weak transcription	Fetal Stomach	stomach
26	chr5:60841200-60844400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:60841200-60844600	Weak transcription	Brain Germinal Matrix	brain
28	chr5:60841400-60844600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr5:60841400-60844600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr5:60842200-60844800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:60842400-60845000	Weak transcription	NHDF-Ad	bronchial
32	chr5:60842600-60844600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr5:60842800-60844400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:60842800-60844600	Weak transcription	Adipose Nuclei	Adipose
35	chr5:60842800-60846200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr5:60843000-60844600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr5:60843000-60844600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:60843000-60844600	Weak transcription	Fetal Kidney	kidney
39	chr5:60843000-60844600	Weak transcription	Fetal Lung	lung
40	chr5:60843000-60844800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr5:60843000-60845200	Weak transcription	Liver	Liver
42	chr5:60843000-60845400	Weak transcription	HUVEC	blood vessel
43	chr5:60843000-60846200	Weak transcription	Primary B cells from cord blood	blood
44	chr5:60843000-60846200	Weak transcription	Osteobl	bone
45	chr5:60843000-60847000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr5:60843000-60847400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr5:60843000-60847800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr5:60843000-60848000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr5:60843000-60848000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr5:60843000-60848400	Weak transcription	HSMMtube	muscle

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