Variant report

Variant	rs13159166
Chromosome Location	chr5:60827739-60827740
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60822270..60824279-chr5:60825655..60828480,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10041978	0.88[ASN][1000 genomes]
rs1045352	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10939903	0.88[ASN][1000 genomes]
rs10939905	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11742658	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11743711	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11747564	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11749200	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11950318	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11952146	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11954430	0.93[ASN][1000 genomes]
rs12187112	0.86[AMR][1000 genomes]
rs12188685	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12188710	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12522647	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13156100	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13157657	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13157831	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13158413	0.92[ASN][1000 genomes]
rs13159018	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13160801	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13162694	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13163970	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13166934	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13170262	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13171497	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13171757	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13172080	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13172084	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13179091	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13179617	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13185068	0.96[ASN][1000 genomes]
rs13185783	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13186194	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13188685	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1348716	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1363892	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1374043	0.93[ASN][1000 genomes]
rs1445976	0.96[ASN][1000 genomes]
rs1445979	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1445980	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1445981	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1477355	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17424296	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1986252	0.93[ASN][1000 genomes]
rs2034239	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2053693	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2053694	0.96[ASN][1000 genomes]
rs2276987	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28610339	0.86[AMR][1000 genomes]
rs55838118	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6449531	0.86[AMR][1000 genomes]
rs6449532	0.86[AMR][1000 genomes]
rs6449533	0.80[AMR][1000 genomes]
rs6449535	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66775554	0.96[ASN][1000 genomes]
rs6865624	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6873712	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6874264	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6874266	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6878927	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6879809	0.96[ASN][1000 genomes]
rs6881799	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6882136	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6885005	0.86[AMR][1000 genomes]
rs6890351	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6894675	0.86[AMR][1000 genomes]
rs6895046	0.93[ASN][1000 genomes]
rs6898746	0.94[ASN][1000 genomes]
rs7443602	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7714457	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7714712	0.86[AMR][1000 genomes]
rs7717082	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7719647	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7722810	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7727824	0.86[AMR][1000 genomes]
rs7732234	0.93[ASN][1000 genomes]
rs7734879	0.86[AMR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
2	chr5:60807600-60829800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:60815400-60833000	Weak transcription	Fetal Brain Male	brain
4	chr5:60815800-60833000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:60815800-60837200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:60816000-60831200	Weak transcription	Ovary	ovary
7	chr5:60816000-60837800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:60817000-60837000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr5:60817000-60837400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:60817600-60828800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:60817800-60843800	Strong transcription	HSMM	muscle
12	chr5:60818000-60838000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:60818800-60837800	Weak transcription	Fetal Heart	heart
14	chr5:60819000-60837400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:60819000-60837800	Weak transcription	Small Intestine	intestine
16	chr5:60819200-60837800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:60819600-60837000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr5:60819600-60837600	Weak transcription	Brain Germinal Matrix	brain
19	chr5:60819800-60830200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:60819800-60830600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr5:60819800-60832400	Weak transcription	HMEC	breast
22	chr5:60821600-60829000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr5:60821600-60834400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:60821800-60828200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:60821800-60829000	Weak transcription	Esophagus	oesophagus
26	chr5:60821800-60829000	Weak transcription	Pancreas	Pancrea
27	chr5:60821800-60831400	Weak transcription	NHEK	skin
28	chr5:60821800-60833000	Weak transcription	Stomach Mucosa	stomach
29	chr5:60821800-60835200	Weak transcription	Gastric	stomach
30	chr5:60821800-60836800	Weak transcription	Colonic Mucosa	Colon
31	chr5:60822000-60833800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:60822000-60834400	Weak transcription	Thymus	Thymus
33	chr5:60822200-60830000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr5:60822200-60831000	Weak transcription	Lung	lung
35	chr5:60822200-60831400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr5:60822200-60835000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr5:60822200-60837800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr5:60822400-60830200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr5:60822400-60830800	Weak transcription	Fetal Kidney	kidney
40	chr5:60822600-60837200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr5:60822800-60835000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr5:60823000-60834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr5:60823600-60831400	Weak transcription	Brain Angular Gyrus	brain
44	chr5:60824000-60829000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr5:60824400-60828200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr5:60824400-60829000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr5:60824400-60837800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:60824600-60828200	Strong transcription	Left Ventricle	heart
49	chr5:60824600-60829600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:60824600-60830000	Strong transcription	A549	lung

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