The 2.0 version of rSNPBase

Variant report

Variant rs60886975
Chromosome Location chr5:60699573-60699574
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60659000-60703800 Weak transcription Primary B cells from cord blood blood
2 chr5:60659400-60703600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr5:60681200-60704000 Weak transcription Brain Germinal Matrix brain
4 chr5:60682000-60709800 Weak transcription Left Ventricle heart
5 chr5:60682600-60703600 Weak transcription Rectal Smooth Muscle rectum
6 chr5:60682600-60704200 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr5:60682600-60712400 Weak transcription Esophagus oesophagus
8 chr5:60685400-60704000 Weak transcription Primary B cells from peripheral blood blood
9 chr5:60687400-60703600 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr5:60687400-60705800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr5:60687600-60704400 Weak transcription Ovary ovary
12 chr5:60687600-60711800 Weak transcription Aorta Aorta
13 chr5:60687800-60703800 Weak transcription Stomach Smooth Muscle stomach
14 chr5:60687800-60704200 Weak transcription Fetal Adrenal Gland Adrenal Gland
15 chr5:60690400-60703600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr5:60690800-60704400 Weak transcription Psoas Muscle Psoas
17 chr5:60690800-60705800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr5:60690800-60706800 Weak transcription Gastric stomach
19 chr5:60691000-60704400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr5:60693200-60702000 Enhancers Brain Hippocampus Middle brain
21 chr5:60694000-60703600 Weak transcription Fetal Muscle Leg muscle
22 chr5:60694000-60705600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
23 chr5:60694400-60700200 Weak transcription Fetal Intestine Small intestine
24 chr5:60695000-60699800 Enhancers Brain Substantia Nigra brain
25 chr5:60695200-60700600 Enhancers Brain Angular Gyrus brain
26 chr5:60695200-60700800 Enhancers Brain Anterior Caudate brain
27 chr5:60695200-60703600 Enhancers A549 lung
28 chr5:60695400-60699600 Enhancers Brain Inferior Temporal Lobe brain
29 chr5:60695600-60699800 Enhancers HUES64 Cell Line embryonic stem cell
30 chr5:60695800-60701000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
31 chr5:60696000-60699600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr5:60696400-60699600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr5:60696600-60703600 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr5:60697000-60700400 Enhancers Hela-S3 cervix
35 chr5:60697200-60699800 Enhancers Monocytes-CD14+_RO01746 blood
36 chr5:60697400-60699800 Enhancers HUES6 Cell Line embryonic stem cell
37 chr5:60697400-60699800 Enhancers iPS-18 Cell Line embryonic stem cell
38 chr5:60697400-60700800 Enhancers Cortex derived primary cultured neurospheres brain
39 chr5:60697600-60699600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr5:60697600-60699600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr5:60697600-60699600 Enhancers NHDF-Ad bronchial
42 chr5:60697600-60703600 Weak transcription HSMMtube muscle
43 chr5:60697800-60699600 Enhancers Fetal Kidney kidney
44 chr5:60697800-60700600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
45 chr5:60697800-60703800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr5:60697800-60704400 Weak transcription Pancreas Pancrea
47 chr5:60698000-60703200 Weak transcription HMEC breast
48 chr5:60698000-60725400 Weak transcription Spleen Spleen
49 chr5:60698200-60703400 Weak transcription iPS-15b Cell Line embryonic stem cell
50 chr5:60698200-60703400 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015