Variant report

Variant	rs13164700
Chromosome Location	chr5:60747484-60747485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60724092..60725738-chr5:60745887..60748387,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10514908	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514909	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738493	0.80[ASN][1000 genomes]
rs11741726	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11746741	0.86[AMR][1000 genomes]
rs11954430	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12188685	0.92[ASN][1000 genomes]
rs13158938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162534	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13165663	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13166779	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13166910	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13167695	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13168165	0.80[ASN][1000 genomes]
rs13170519	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13174756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17338553	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17424296	0.92[ASN][1000 genomes]
rs34993457	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35704054	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs36069847	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs55819324	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62368661	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62368664	0.86[AMR][1000 genomes]
rs7446236	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753894	chr5:60731458-60777345	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60737800-60757000	Weak transcription	Gastric	stomach
2	chr5:60739600-60750400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:60739600-60752200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:60740600-60747600	Enhancers	Brain Substantia Nigra	brain
5	chr5:60741800-60748000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr5:60742600-60748000	Enhancers	Brain Angular Gyrus	brain
7	chr5:60743600-60756200	Weak transcription	Fetal Kidney	kidney
8	chr5:60744200-60751200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:60744400-60767800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr5:60744600-60747600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:60745200-60747600	Enhancers	NHEK	skin
12	chr5:60745200-60747800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:60745200-60748600	Enhancers	HSMM	muscle
14	chr5:60745400-60747600	Enhancers	HUVEC	blood vessel
15	chr5:60746000-60759600	Weak transcription	Aorta	Aorta
16	chr5:60746200-60747600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:60746200-60747600	Enhancers	Osteobl	bone
18	chr5:60746200-60749200	Enhancers	Hela-S3	cervix
19	chr5:60746200-60749800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:60746200-60750600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:60746200-60751000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:60746200-60751200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:60746200-60751200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr5:60746200-60751200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:60746200-60759800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr5:60746400-60747800	Weak transcription	Fetal Brain Female	brain
27	chr5:60746400-60748400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr5:60746400-60758600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr5:60746600-60747600	Enhancers	NHDF-Ad	bronchial
30	chr5:60746600-60748200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:60746800-60747600	Enhancers	NH-A	brain
32	chr5:60746800-60747800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr5:60747000-60747600	Enhancers	A549	lung
34	chr5:60747000-60748200	Enhancers	HSMMtube	muscle
35	chr5:60747000-60748800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:60747000-60750600	Weak transcription	Stomach Mucosa	stomach
37	chr5:60747000-60751200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr5:60747000-60751200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:60747000-60751200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr5:60747000-60751200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr5:60747000-60751200	Weak transcription	Psoas Muscle	Psoas
42	chr5:60747000-60751200	Weak transcription	Right Atrium	heart
43	chr5:60747000-60751800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr5:60747000-60752200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr5:60747000-60752200	Weak transcription	Fetal Intestine Small	intestine
46	chr5:60747000-60752400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr5:60747000-60752400	Weak transcription	Brain Hippocampus Middle	brain
48	chr5:60747000-60757200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr5:60747000-60760600	Weak transcription	NHLF	lung
50	chr5:60747000-60762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links