Variant report

Variant	rs11746741
Chromosome Location	chr5:60707445-60707446
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60704554..60708458-chr5:60711463..60715174,4	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10514908	0.86[AMR][1000 genomes]
rs10939897	0.91[CEU][hapmap]
rs11738493	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11960587	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs13154581	0.92[CEU][hapmap]
rs13154663	0.85[CEU][hapmap]
rs13156118	0.92[CEU][hapmap]
rs13158938	0.86[AMR][1000 genomes]
rs13162534	0.88[JPT][hapmap]
rs13164700	0.86[AMR][1000 genomes]
rs13165663	0.84[AMR][1000 genomes]
rs13166779	0.84[AMR][1000 genomes]
rs13167695	0.88[JPT][hapmap]
rs13168165	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13170519	0.84[AMR][1000 genomes]
rs13174756	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13178686	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs17338553	0.86[AMR][1000 genomes]
rs17424296	0.88[JPT][hapmap]
rs34027100	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34323293	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35704054	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36069847	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4544785	0.86[CEU][hapmap]
rs55819324	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62368661	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62368664	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870349	0.85[CEU][hapmap]
rs7446236	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60682000-60709800	Weak transcription	Left Ventricle	heart
2	chr5:60682600-60712400	Weak transcription	Esophagus	oesophagus
3	chr5:60687600-60711800	Weak transcription	Aorta	Aorta
4	chr5:60698000-60725400	Weak transcription	Spleen	Spleen
5	chr5:60703600-60708800	Enhancers	Brain Substantia Nigra	brain
6	chr5:60704800-60708400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr5:60704800-60709800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:60704800-60709800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:60704800-60709800	Weak transcription	Pancreas	Pancrea
10	chr5:60705000-60707800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:60705000-60708200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:60705200-60708000	Weak transcription	Ovary	ovary
13	chr5:60705200-60708200	Enhancers	Brain Anterior Caudate	brain
14	chr5:60705200-60708600	Enhancers	Brain Hippocampus Middle	brain
15	chr5:60705200-60727200	Weak transcription	Fetal Stomach	stomach
16	chr5:60705400-60708000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:60705400-60708400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:60705400-60708400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:60705400-60713400	Weak transcription	Brain Germinal Matrix	brain
20	chr5:60705400-60713600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr5:60705600-60712200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:60705600-60719000	Weak transcription	Fetal Brain Male	brain
23	chr5:60705800-60707600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:60705800-60708400	Enhancers	Brain Cingulate Gyrus	brain
25	chr5:60705800-60708600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr5:60705800-60709800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr5:60705800-60709800	Weak transcription	Liver	Liver
28	chr5:60705800-60710400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr5:60705800-60711400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr5:60706000-60707800	Weak transcription	Brain Angular Gyrus	brain
31	chr5:60706000-60708000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr5:60706000-60709800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr5:60706000-60709800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:60706000-60709800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr5:60706000-60709800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr5:60706000-60709800	Weak transcription	Psoas Muscle	Psoas
37	chr5:60706000-60709800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr5:60706000-60709800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr5:60706000-60709800	Weak transcription	NHLF	lung
40	chr5:60706000-60710000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr5:60706000-60710600	Weak transcription	Stomach Mucosa	stomach
42	chr5:60706000-60711000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:60706000-60711400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr5:60706000-60711800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr5:60706000-60711800	Weak transcription	Fetal Kidney	kidney
46	chr5:60706000-60712200	Weak transcription	Small Intestine	intestine
47	chr5:60706000-60713400	Weak transcription	Adipose Nuclei	Adipose
48	chr5:60706000-60713600	Weak transcription	Primary B cells from cord blood	blood
49	chr5:60706000-60719200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr5:60706000-60721400	Weak transcription	Fetal Intestine Large	intestine

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