Variant report

Variant	rs13192476
Chromosome Location	chr6:109725154-109725155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109716495..109718176-chr6:109722543..109725492,2	K562	blood:
2	chr6:109725144..109727346-chr6:109731443..109733343,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11753645	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11757877	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12524502	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12528566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12528712	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13195517	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13199519	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13203252	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1322818	0.80[AMR][1000 genomes]
rs2275652	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34131679	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34292461	0.80[AMR][1000 genomes]
rs34320275	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34533653	0.80[AMR][1000 genomes]
rs35452836	0.83[EUR][1000 genomes]
rs35969918	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757238	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3799835	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3799840	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4428538	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61076041	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61233650	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61318425	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67857472	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6929208	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs13192476	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs13192476	RP11-425D10.10	cis	Esophagus Mucosa	GTEx
rs13192476	MICAL1	Cis_1M	lymphoblastoid	RTeQTL
rs13192476	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs13192476	SMPD2	cis	Whole Blood	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109706600-109735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:109712800-109736200	Weak transcription	Left Ventricle	heart
5	chr6:109715400-109730400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
7	chr6:109723400-109728000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:109724200-109725200	Weak transcription	NHEK	skin
9	chr6:109724200-109725400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:109724400-109727200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:109724400-109750400	Weak transcription	Ovary	ovary
12	chr6:109724800-109725400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:109725000-109725600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:109725000-109725800	Strong transcription	Brain Anterior Caudate	brain
15	chr6:109725000-109736600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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