Variant report

Variant	rs6929208
Chromosome Location	chr6:109720405-109720406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109687588..109690401-chr6:109719781..109721950,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11753645	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11757877	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12524502	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12528566	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12528712	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13192476	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13195517	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13199519	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13203252	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1322818	0.86[AMR][1000 genomes]
rs2275652	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34131679	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34292461	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34320275	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35452836	0.84[EUR][1000 genomes]
rs35969918	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3757238	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3799835	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3799840	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4428538	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61076041	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61233650	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61318425	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67857472	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6929208	SMPD2	cis	Whole Blood	GTEx
rs6929208	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs6929208	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs6929208	MICAL1	Cis_1M	lymphoblastoid	RTeQTL
rs6929208	RP11-425D10.10	cis	Esophagus Mucosa	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109706600-109735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:109711800-109725000	Weak transcription	Brain Anterior Caudate	brain
5	chr6:109712800-109736200	Weak transcription	Left Ventricle	heart
6	chr6:109715200-109721600	Weak transcription	K562	blood
7	chr6:109715400-109730400	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:109716200-109723600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:109718000-109721800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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