Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10499052	0.89[AFR][1000 genomes]
rs11753645	0.83[EUR][1000 genomes]
rs11757877	0.82[EUR][1000 genomes]
rs12528566	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13192476	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13195517	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13199519	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13203252	0.83[EUR][1000 genomes]
rs13204787	0.89[AFR][1000 genomes]
rs1322818	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2275652	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34131679	0.83[EUR][1000 genomes]
rs34292461	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34320275	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34533653	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35969918	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3757238	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3799835	0.83[EUR][1000 genomes]
rs3799840	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61076041	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61233650	0.83[EUR][1000 genomes]
rs61318425	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67857472	0.83[EUR][1000 genomes]
rs6929208	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71558370	0.87[AMR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4428538	RP11-425D10.10	cis	Esophagus Mucosa	GTEx
rs4428538	SMPD2	cis	Whole Blood	GTEx
rs4428538	MICAL1	Cis_1M	lymphoblastoid	RTeQTL
rs4428538	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109706600-109735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:109712800-109736200	Weak transcription	Left Ventricle	heart
5	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
6	chr6:109724400-109750400	Weak transcription	Ovary	ovary
7	chr6:109725000-109736600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:109725600-109731800	Weak transcription	NHEK	skin
9	chr6:109725800-109732000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:109725800-109760800	Weak transcription	Brain Anterior Caudate	brain
11	chr6:109729600-109734400	Weak transcription	Psoas Muscle	Psoas

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