Variant report

Variant	rs61233650
Chromosome Location	chr6:109686612-109686613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109684562..109687359-chr6:109766096..109767910,2	K562	blood:
2	chr6:109676926..109679753-chr6:109685240..109687572,2	K562	blood:
3	chr6:109684963..109689881-chr6:109693239..109697523,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11753645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757877	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12524502	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12528566	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12528712	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13192476	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13195517	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13199519	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13203252	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13220304	0.80[EUR][1000 genomes]
rs1322818	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2275652	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34131679	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34292461	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34320275	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35452836	0.84[EUR][1000 genomes]
rs35969918	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3757238	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3799835	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799840	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4428538	0.83[EUR][1000 genomes]
rs61076041	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61318425	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67857472	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6929208	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs61233650	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs61233650	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs61233650	RP11-425D10.10	cis	Esophagus Mucosa	GTEx
rs61233650	SMPD2	cis	Whole Blood	GTEx
rs61233650	MICAL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109673600-109687000	Weak transcription	Right Ventricle	heart
2	chr6:109675000-109691800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:109675000-109692600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:109675000-109693200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:109675000-109694400	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr6:109675000-109694600	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
8	chr6:109675200-109688800	Strong transcription	Primary T cells from cord blood	blood
9	chr6:109675200-109693200	Strong transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:109675400-109691400	Strong transcription	Osteobl	bone
11	chr6:109676800-109693800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:109677000-109687200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:109677000-109698200	Strong transcription	Fetal Intestine Large	intestine
14	chr6:109677600-109695000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:109677800-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:109678200-109687800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:109678200-109691400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:109678200-109694600	Strong transcription	Fetal Thymus	thymus
19	chr6:109678200-109695200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr6:109678400-109694400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:109678400-109694400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:109678600-109693200	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:109678600-109693400	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:109678800-109695400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr6:109678800-109699000	Strong transcription	Dnd41	blood
26	chr6:109679000-109688200	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:109679000-109693200	Strong transcription	K562	blood
28	chr6:109679200-109700400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:109679400-109689000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:109679400-109700600	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:109680400-109697200	Weak transcription	Fetal Brain Male	brain
32	chr6:109680600-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:109680800-109688200	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:109680800-109694400	Strong transcription	Primary B cells from peripheral blood	blood
35	chr6:109681000-109689400	Weak transcription	Brain Angular Gyrus	brain
36	chr6:109682400-109692600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:109682600-109700800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:109683200-109699800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:109683600-109692800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:109683800-109687200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:109683800-109687400	Weak transcription	NH-A	brain
42	chr6:109683800-109688000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:109683800-109693400	Strong transcription	Primary B cells from cord blood	blood
44	chr6:109683800-109700600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:109684000-109687400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:109684000-109687400	Weak transcription	Psoas Muscle	Psoas
47	chr6:109684000-109687400	Weak transcription	HMEC	breast
48	chr6:109684000-109687400	Weak transcription	HUVEC	blood vessel
49	chr6:109684000-109687600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:109684000-109687600	Weak transcription	A549	lung

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