Variant report

Variant	rs34292461
Chromosome Location	chr6:109673480-109673481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109668456..109674736-chr6:109696300..109702886,9	K562	blood:
2	chr6:109669515..109674044-chr6:109702916..109706265,4	K562	blood:
3	chr6:109660514..109663248-chr6:109671174..109674117,2	K562	blood:
4	chr6:109665458..109673633-chr6:109699710..109704931,12	MCF-7	breast:
5	chr6:109669396..109675577-chr6:109699158..109705270,9	K562	blood:
6	chr6:109673118..109675059-chr6:109773083..109775082,2	K562	blood:
7	chr6:109667528..109670285-chr6:109670801..109673728,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135596	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11753645	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11757877	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12524502	0.81[EUR][1000 genomes]
rs12528566	0.80[AMR][1000 genomes]
rs12528712	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13192476	0.80[AMR][1000 genomes]
rs13195517	0.80[AMR][1000 genomes]
rs13199519	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13203252	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1322818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2275652	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34131679	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34320275	0.81[AMR][1000 genomes]
rs34533653	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35969918	0.80[AMR][1000 genomes]
rs3757238	0.81[AMR][1000 genomes]
rs3799835	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3799840	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4428538	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61233650	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61318425	0.80[AMR][1000 genomes]
rs67857472	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6929208	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs34292461	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs34292461	RP11-425D10.10	cis	Esophagus Mucosa	GTEx
rs34292461	SMPD2	cis	Whole Blood	GTEx
rs34292461	MICAL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
5	chr6:109660200-109677200	Weak transcription	Thymus	Thymus
6	chr6:109660400-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:109662600-109682000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:109662800-109677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:109665600-109677000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:109665600-109680400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:109666000-109678000	Weak transcription	Fetal Kidney	kidney
12	chr6:109666400-109675200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:109668000-109673800	Enhancers	Stomach Mucosa	stomach
14	chr6:109668000-109674000	Enhancers	Fetal Intestine Large	intestine
15	chr6:109668000-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:109668600-109674800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:109669000-109674000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr6:109669000-109683400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:109669400-109673800	Enhancers	Colonic Mucosa	Colon
20	chr6:109669600-109677000	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:109669600-109677200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:109669800-109677200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:109670400-109674000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:109670800-109674400	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr6:109671000-109673600	Enhancers	Gastric	stomach
26	chr6:109671000-109677800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:109671000-109681600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:109671200-109677000	Weak transcription	Aorta	Aorta
29	chr6:109671200-109677200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:109671200-109680200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:109671200-109681400	Weak transcription	Brain Anterior Caudate	brain
32	chr6:109671400-109674400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:109671400-109675000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:109671400-109675000	Weak transcription	Liver	Liver
35	chr6:109671400-109675000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr6:109671400-109675200	Weak transcription	Ovary	ovary
37	chr6:109671400-109675400	Weak transcription	Osteobl	bone
38	chr6:109671400-109675600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:109671400-109677200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:109671400-109677200	Weak transcription	A549	lung
41	chr6:109671400-109677600	Weak transcription	HepG2	liver
42	chr6:109671400-109677800	Weak transcription	Fetal Lung	lung
43	chr6:109671600-109674000	Enhancers	K562	blood
44	chr6:109671600-109676400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:109671600-109677000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:109671600-109678200	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:109672000-109674000	Enhancers	Small Intestine	intestine
48	chr6:109672000-109674200	Enhancers	Fetal Intestine Small	intestine
49	chr6:109672000-109674600	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr6:109672000-109675600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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