Variant report

Variant	rs1322818
Chromosome Location	chr6:109691101-109691102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109654230..109656152-chr6:109690482..109693249,2	MCF-7	breast:
2	chr6:109666475..109669130-chr6:109690489..109693013,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10499052	1.00[CEU][hapmap]
rs11753645	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11757877	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12524502	0.82[CEU][hapmap]
rs12528566	0.80[AMR][1000 genomes]
rs12528712	0.87[CEU][hapmap];0.91[AMR][1000 genomes]
rs13192476	0.80[AMR][1000 genomes]
rs13195517	0.87[CEU][hapmap];0.80[AMR][1000 genomes]
rs13199519	0.81[CEU][hapmap];0.86[AMR][1000 genomes]
rs13203252	0.86[CEU][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2275652	0.86[AMR][1000 genomes]
rs34131679	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34292461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34320275	0.81[AMR][1000 genomes]
rs34533653	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35969918	0.80[AMR][1000 genomes]
rs3757238	0.81[AMR][1000 genomes]
rs3799835	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3799840	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4428538	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61233650	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61318425	0.80[AMR][1000 genomes]
rs67857472	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6929208	0.86[AMR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1322818	MICAL1	Cis_1M	lymphoblastoid	RTeQTL
rs1322818	RP11-425D10.10	cis	Esophagus Mucosa	GTEx
rs1322818	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs1322818	SMPD2	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109675000-109691800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:109675000-109692600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:109675000-109693200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr6:109675000-109694400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr6:109675000-109694600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
7	chr6:109675200-109693200	Strong transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:109675400-109691400	Strong transcription	Osteobl	bone
9	chr6:109676800-109693800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:109677000-109698200	Strong transcription	Fetal Intestine Large	intestine
11	chr6:109677600-109695000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:109677800-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:109678200-109691400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:109678200-109694600	Strong transcription	Fetal Thymus	thymus
15	chr6:109678200-109695200	Strong transcription	Duodenum Mucosa	Duodenum
16	chr6:109678400-109694400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:109678400-109694400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:109678600-109693200	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:109678600-109693400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:109678800-109695400	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr6:109678800-109699000	Strong transcription	Dnd41	blood
22	chr6:109679000-109693200	Strong transcription	K562	blood
23	chr6:109679200-109700400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:109679400-109700600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:109680400-109697200	Weak transcription	Fetal Brain Male	brain
26	chr6:109680600-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:109680800-109694400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr6:109682400-109692600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:109682600-109700800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:109683200-109699800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:109683600-109692800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr6:109683800-109693400	Strong transcription	Primary B cells from cord blood	blood
33	chr6:109683800-109700600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:109684000-109691200	Weak transcription	HSMMtube	muscle
35	chr6:109684000-109691400	Weak transcription	Brain Germinal Matrix	brain
36	chr6:109684000-109691600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:109684000-109692000	Weak transcription	Esophagus	oesophagus
38	chr6:109684000-109692800	Weak transcription	NHLF	lung
39	chr6:109684000-109693200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:109684000-109693400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr6:109684000-109693400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:109684000-109693400	Weak transcription	Stomach Mucosa	stomach
43	chr6:109684000-109694600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:109684000-109694600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:109684000-109694600	Weak transcription	Aorta	Aorta
46	chr6:109684000-109694600	Weak transcription	Fetal Heart	heart
47	chr6:109684000-109694600	Weak transcription	Gastric	stomach
48	chr6:109684000-109694600	Weak transcription	Ovary	ovary
49	chr6:109684000-109694600	Weak transcription	Pancreas	Pancrea
50	chr6:109684000-109694800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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