Variant report

Variant	rs13199885
Chromosome Location	chr6:107240868-107240869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11751550	0.88[ASN][1000 genomes]
rs11752168	0.88[ASN][1000 genomes]
rs11962241	0.88[ASN][1000 genomes]
rs12661346	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71574211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770877	0.88[ASN][1000 genomes]
rs910529	0.88[ASN][1000 genomes]
rs910530	0.88[ASN][1000 genomes]
rs910531	0.88[ASN][1000 genomes]
rs9480707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480708	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9486465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9486466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107232400-107245000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:107235400-107242400	Enhancers	HepG2	liver
3	chr6:107236600-107241800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:107236800-107241600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:107237200-107245000	Weak transcription	Liver	Liver
6	chr6:107238800-107242800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:107238800-107242800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:107239800-107241000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:107240200-107241000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:107240400-107241000	Enhancers	HMEC	breast
11	chr6:107240600-107241400	Enhancers	Pancreas	Pancrea
12	chr6:107240800-107241000	Enhancers	Esophagus	oesophagus
13	chr6:107240800-107241000	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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