Variant report

Variant	rs11751550
Chromosome Location	chr6:107252236-107252237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107246166..107247862-chr6:107251741..107254084,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11752168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753287	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11757253	0.94[EUR][1000 genomes]
rs11757264	0.94[EUR][1000 genomes]
rs11962241	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661346	0.88[ASN][1000 genomes]
rs12662469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13199885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1358724	0.81[AFR][1000 genomes]
rs272584	0.86[EUR][1000 genomes]
rs6937522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs71574211	0.88[ASN][1000 genomes]
rs7750798	0.82[EUR][1000 genomes]
rs7770877	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910529	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910530	1.00[ASN][1000 genomes]
rs910531	1.00[ASN][1000 genomes]
rs9372144	0.82[EUR][1000 genomes]
rs9400072	0.82[EUR][1000 genomes]
rs9400073	0.82[EUR][1000 genomes]
rs9480707	0.88[ASN][1000 genomes]
rs9480708	0.88[ASN][1000 genomes]
rs9480709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9480711	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9486465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9486466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9486479	0.82[EUR][1000 genomes]
rs9486480	0.82[EUR][1000 genomes]
rs9486481	0.82[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107247200-107253000	Enhancers	H9 Cell Line	embryonic stem cell
2	chr6:107249000-107254600	Weak transcription	NHEK	skin
3	chr6:107249000-107255400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:107250000-107252800	Enhancers	Fetal Intestine Large	intestine
5	chr6:107250200-107253200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:107250200-107253800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:107250800-107253000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:107250800-107253000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:107251000-107253000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:107251000-107253000	Enhancers	Fetal Intestine Small	intestine
11	chr6:107251000-107253200	Enhancers	Fetal Kidney	kidney
12	chr6:107251200-107252600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:107251400-107252600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:107251600-107252800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:107251600-107252800	Enhancers	Pancreas	Pancrea
16	chr6:107251600-107253000	Enhancers	HepG2	liver
17	chr6:107251800-107252800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:107251800-107252800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:107251800-107252800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:107251800-107253000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr6:107251800-107254000	Enhancers	Placenta	Placenta
22	chr6:107252000-107252400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:107252000-107252400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr6:107252000-107252400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:107252000-107252600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:107252000-107252600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:107252000-107252600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr6:107252000-107253200	Enhancers	Stomach Mucosa	stomach
29	chr6:107252200-107252400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:107252200-107252400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr6:107252200-107252600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:107252200-107252800	Enhancers	K562	blood

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