Variant report

Variant	rs6937522
Chromosome Location	chr6:107248087-107248088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:107231097..107232652-chr6:107246781..107249038,2	MCF-7	breast:
2	chr6:107244229..107246298-chr6:107247431..107250312,2	MCF-7	breast:
3	chr6:107230853..107233616-chr6:107246392..107249862,3	MCF-7	breast:
4	chr6:107238382..107240976-chr6:107247724..107249979,2	K562	blood:

Variant related genes	Relation type
ENSG00000207577	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11751550	0.88[ASN][1000 genomes]
rs11752168	0.88[ASN][1000 genomes]
rs11962241	0.88[ASN][1000 genomes]
rs12661346	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71574211	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770877	0.88[ASN][1000 genomes]
rs910529	0.88[ASN][1000 genomes]
rs910530	0.88[ASN][1000 genomes]
rs910531	0.88[ASN][1000 genomes]
rs9480707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480708	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9486465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9486466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107245000-107248600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:107245200-107249000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:107245200-107249200	Enhancers	HMEC	breast
4	chr6:107245200-107249600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:107245600-107251800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:107246000-107248200	Enhancers	HSMMtube	muscle
7	chr6:107246000-107248600	Enhancers	Fetal Intestine Large	intestine
8	chr6:107246000-107249000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:107246000-107249000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:107246000-107250600	Enhancers	Fetal Intestine Small	intestine
11	chr6:107246000-107251400	Enhancers	Pancreas	Pancrea
12	chr6:107246000-107252000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:107246200-107249000	Enhancers	NHEK	skin
14	chr6:107246200-107250400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:107246400-107248400	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr6:107246800-107248200	Enhancers	Stomach Mucosa	stomach
17	chr6:107246800-107249000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:107246800-107249200	Enhancers	Esophagus	oesophagus
19	chr6:107246800-107250200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:107246800-107252000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:107247000-107248200	Enhancers	Duodenum Mucosa	Duodenum
22	chr6:107247000-107248200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr6:107247000-107248400	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr6:107247000-107249000	Enhancers	Psoas Muscle	Psoas
25	chr6:107247000-107251000	Weak transcription	Gastric	stomach
26	chr6:107247200-107248200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:107247200-107248200	Enhancers	Fetal Kidney	kidney
28	chr6:107247200-107248400	Enhancers	Small Intestine	intestine
29	chr6:107247200-107251200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:107247200-107253000	Enhancers	H9 Cell Line	embryonic stem cell
31	chr6:107247400-107248200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:107247400-107248200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:107247400-107248400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:107247400-107248400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr6:107247400-107252200	Weak transcription	K562	blood
36	chr6:107247600-107248600	Enhancers	Liver	Liver
37	chr6:107247600-107248800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:107247600-107249000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:107247600-107251000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:107247600-107251800	Weak transcription	Placenta	Placenta
41	chr6:107247800-107248200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:107247800-107249400	Enhancers	HepG2	liver
43	chr6:107248000-107248200	Flanking Active TSS	Hela-S3	cervix
44	chr6:107248000-107248400	Enhancers	A549	lung
45	chr6:107248000-107249600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:107248000-107250200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:107248000-107251000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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