Variant report

Variant	rs13203383
Chromosome Location	chr6:82782687-82782688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82773916..82775814-chr6:82782251..82783759,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13194372	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13202517	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13202912	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13203060	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13208556	0.81[AMR][1000 genomes]
rs13215460	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1891346	0.82[AMR][1000 genomes]
rs2105124	0.82[AMR][1000 genomes]
rs34424495	0.81[AMR][1000 genomes]
rs56989837	0.81[AMR][1000 genomes]
rs62429917	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62429943	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7773306	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7775215	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82778800-82784600	Weak transcription	Right Ventricle	heart
2	chr6:82781000-82784600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:82781400-82783400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:82781400-82783400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:82781400-82783600	Enhancers	Osteobl	bone
6	chr6:82781600-82783000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:82781600-82783200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:82781600-82783200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:82781600-82783400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:82781600-82783600	Enhancers	Fetal Muscle Leg	muscle
11	chr6:82781800-82782800	Enhancers	HSMM	muscle
12	chr6:82781800-82783200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:82781800-82783400	Enhancers	NH-A	brain
14	chr6:82781800-82783600	Enhancers	HepG2	liver
15	chr6:82781800-82783600	Enhancers	NHDF-Ad	bronchial
16	chr6:82782200-82783200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:82782400-82783000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:82782400-82786200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:82782600-82782800	Enhancers	Left Ventricle	heart
20	chr6:82782600-82783400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:82782600-82784400	Weak transcription	H9 Cell Line	embryonic stem cell

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