Variant report
Variant | rs7775215 |
---|---|
Chromosome Location | chr6:82799872-82799873 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:82797370..82801181-chr6:82806554..82809565,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12528973 | 0.85[AMR][1000 genomes] |
rs13194372 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs13196653 | 0.83[AMR][1000 genomes] |
rs13201179 | 0.85[AMR][1000 genomes] |
rs13202517 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13202912 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13203060 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13203383 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs13208556 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs13211030 | 0.85[AMR][1000 genomes] |
rs13211186 | 0.82[AMR][1000 genomes] |
rs13213760 | 0.81[AMR][1000 genomes] |
rs13215460 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1891346 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1933023 | 0.88[ASN][1000 genomes] |
rs2105124 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs34424495 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs35958090 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs4452688 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs4706933 | 0.83[AMR][1000 genomes] |
rs56989837 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs62429917 | 0.82[EUR][1000 genomes] |
rs62429943 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7750228 | 0.85[AMR][1000 genomes] |
rs7773306 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1021464 | chr6:82738920-82876526 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv830713 | chr6:82761201-82953570 | Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:82799600-82801000 | Weak transcription | HepG2 | liver |