Variant report

Variant	rs4706933
Chromosome Location	chr6:82851515-82851516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82848559..82851621-chr6:82851762..82855023,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12528973	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13194372	0.82[AMR][1000 genomes]
rs13196653	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13200811	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13201179	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13202517	0.83[AMR][1000 genomes]
rs13202912	0.83[AMR][1000 genomes]
rs13203060	0.83[AMR][1000 genomes]
rs13208556	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13211030	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13211186	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13213760	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13215460	0.83[AMR][1000 genomes]
rs13215666	0.96[ASN][1000 genomes]
rs1891346	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2027246	0.89[ASN][1000 genomes]
rs2105124	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34424495	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35958090	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4452688	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56989837	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62429943	0.85[AMR][1000 genomes]
rs7741402	0.86[ASN][1000 genomes]
rs7750228	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7773306	0.83[AMR][1000 genomes]
rs7775215	0.83[AMR][1000 genomes]
rs9443956	0.86[ASN][1000 genomes]
rs9443960	0.93[ASN][1000 genomes]
rs9443963	0.96[ASN][1000 genomes]
rs9443964	0.96[ASN][1000 genomes]
rs9449423	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830715	chr6:82806657-82956327	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv7937	chr6:82840235-83244788	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82848600-82852600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:82849000-82851600	Weak transcription	Fetal Heart	heart
3	chr6:82849200-82852800	Weak transcription	HMEC	breast
4	chr6:82849400-82853200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:82849400-82853200	Weak transcription	HUVEC	blood vessel
6	chr6:82849600-82852400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:82850200-82852600	Weak transcription	Osteobl	bone
8	chr6:82850400-82853000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:82850400-82853000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:82850600-82852000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:82850600-82852400	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links