Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12528973	0.82[AMR][1000 genomes]
rs13194372	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13196653	0.81[AMR][1000 genomes]
rs13198175	0.84[AMR][1000 genomes]
rs13201179	0.82[AMR][1000 genomes]
rs13202517	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13202912	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13203060	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13203383	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13208556	0.85[AMR][1000 genomes]
rs13211030	0.82[AMR][1000 genomes]
rs13211186	0.84[AMR][1000 genomes]
rs13213760	0.81[AMR][1000 genomes]
rs1891346	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2105124	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34424495	0.85[AMR][1000 genomes]
rs35958090	0.81[AMR][1000 genomes]
rs4452688	0.84[AMR][1000 genomes]
rs4706933	0.83[AMR][1000 genomes]
rs56989837	0.85[AMR][1000 genomes]
rs62429917	0.84[EUR][1000 genomes]
rs62429943	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7750228	0.82[AMR][1000 genomes]
rs7773306	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7775215	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82782400-82786200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:82782800-82786400	Weak transcription	HSMM	muscle
3	chr6:82783200-82785600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:82783400-82786200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:82783400-82786400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:82783400-82793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:82783400-82797800	Weak transcription	Left Ventricle	heart
8	chr6:82783600-82786400	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:82783600-82786400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:82783600-82786400	Weak transcription	Osteobl	bone
11	chr6:82783600-82788000	Weak transcription	HepG2	liver
12	chr6:82784800-82786200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:82784800-82786400	Weak transcription	Adipose Nuclei	Adipose
14	chr6:82784800-82786400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:82784800-82787800	Weak transcription	Right Ventricle	heart
16	chr6:82785000-82786200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:82785000-82786200	Weak transcription	NHDF-Ad	bronchial

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