Variant report

Variant	rs13202912
Chromosome Location	chr6:82789536-82789537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12528973	0.85[AMR][1000 genomes]
rs13194372	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13196653	0.84[AMR][1000 genomes]
rs13198175	0.81[AMR][1000 genomes]
rs13201179	0.85[AMR][1000 genomes]
rs13202517	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203383	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13208556	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13211030	0.85[AMR][1000 genomes]
rs13211186	0.84[AMR][1000 genomes]
rs13213760	0.81[AMR][1000 genomes]
rs13215460	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1891346	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2105124	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34424495	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35958090	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4452688	0.86[AMR][1000 genomes]
rs4706933	0.83[AMR][1000 genomes]
rs56989837	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62429917	0.85[EUR][1000 genomes]
rs62429943	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7750228	0.85[AMR][1000 genomes]
rs7773306	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775215	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82783400-82793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:82783400-82797800	Weak transcription	Left Ventricle	heart
3	chr6:82787000-82790200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:82787200-82790000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:82788200-82790600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:82789200-82789800	Weak transcription	NHDF-Ad	bronchial
7	chr6:82789200-82792200	Weak transcription	HepG2	liver

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