Variant report

Variant	rs1891346
Chromosome Location	chr6:82804564-82804565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82796956..82799385-chr6:82802656..82805206,2	MCF-7	breast:
2	chr6:82804324..82806563-chr6:82808458..82810667,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12528973	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13194372	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13196653	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13200811	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13201179	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13202517	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13202912	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13203060	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13203383	0.82[AMR][1000 genomes]
rs13208556	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13211030	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13211186	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13213760	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13215460	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1933023	0.93[ASN][1000 genomes]
rs2027246	0.80[ASN][1000 genomes]
rs2105124	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34424495	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35958090	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4452688	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4706933	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56989837	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62429943	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7750228	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7773306	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7775215	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82803600-82806200	Enhancers	HepG2	liver
2	chr6:82804000-82804600	Enhancers	Liver	Liver

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