Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82804324..82806563-chr6:82808458..82810667,2	K562	blood:
2	chr6:82797370..82801181-chr6:82806554..82809565,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12528973	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13194372	0.87[AMR][1000 genomes]
rs13196653	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13200811	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13201179	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13202517	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13202912	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13203060	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13203383	0.82[AMR][1000 genomes]
rs13208556	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13211030	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13211186	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13213760	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13215460	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1891346	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933023	0.94[ASN][1000 genomes]
rs34424495	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35958090	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4452688	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4706933	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56989837	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62429943	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7750228	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7773306	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7775215	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830715	chr6:82806657-82956327	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2105124	FAM46A	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82806600-82809400	Enhancers	HepG2	liver

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