Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13207760	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209808	1.00[AFR][1000 genomes]
rs13220044	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34206951	1.00[AFR][1000 genomes]
rs34736881	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34753135	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34832025	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34950886	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs352081	1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs352082	0.82[JPT][hapmap]
rs352084	0.82[JPT][hapmap]
rs35384158	0.93[ASN][1000 genomes]
rs35470926	1.00[AFR][1000 genomes]
rs35542449	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35902942	0.80[ASN][1000 genomes]
rs36000791	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417365	0.80[ASN][1000 genomes]
rs66794022	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66812545	0.80[ASN][1000 genomes]
rs71541084	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72960759	0.80[ASN][1000 genomes]
rs773683	0.83[CHB][hapmap]
rs773684	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13208937	COL10A1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114066400-114071000	Weak transcription	HepG2	liver
2	chr6:114066800-114071000	Weak transcription	Adipose Nuclei	Adipose
3	chr6:114067000-114075800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:114067400-114079200	Weak transcription	Placenta	Placenta
5	chr6:114067800-114070800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:114069800-114070000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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