Variant report

Variant	rs34832025
Chromosome Location	chr6:114084392-114084393
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114078677..114080335-chr6:114081487..114084433,2	MCF-7	breast:
2	chr6:114017203..114020038-chr6:114083854..114086336,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13193860	0.81[AMR][1000 genomes]
rs13200525	0.84[AMR][1000 genomes]
rs13201785	0.81[AMR][1000 genomes]
rs13204232	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13207760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13208937	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13209808	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13220044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17789266	0.84[AMR][1000 genomes]
rs2695454	0.81[AMR][1000 genomes]
rs34206951	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs34736881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34753135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34950886	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35384158	0.91[ASN][1000 genomes]
rs35409527	0.81[AMR][1000 genomes]
rs35470926	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs35542449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35902942	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36000791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62417365	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66794022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71541084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72960759	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv464023	chr6:114071720-114114057	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv604532	chr6:114071720-114114057	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114077000-114085000	Weak transcription	Psoas Muscle	Psoas
2	chr6:114077600-114084600	Weak transcription	HSMM	muscle
3	chr6:114080400-114085000	Weak transcription	A549	lung
4	chr6:114083000-114086000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:114083600-114085600	Enhancers	HUVEC	blood vessel
6	chr6:114083800-114084800	Enhancers	NHEK	skin
7	chr6:114083800-114085600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:114083800-114085600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:114083800-114085600	Enhancers	HMEC	breast
10	chr6:114083800-114085600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:114083800-114085600	Enhancers	Osteobl	bone
12	chr6:114084000-114084400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:114084000-114084800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:114084000-114085600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:114084000-114085600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:114084000-114085600	Enhancers	Placenta	Placenta
17	chr6:114084200-114084400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:114084200-114085200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:114084200-114085400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:114084200-114085400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:114084200-114085400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:114084200-114085400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:114084200-114085400	Enhancers	Stomach Mucosa	stomach
24	chr6:114084200-114085400	Flanking Active TSS	GM12878-XiMat	blood
25	chr6:114084200-114085400	Enhancers	Hela-S3	cervix
26	chr6:114084200-114085400	Enhancers	NHLF	lung
27	chr6:114084200-114085600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr6:114084200-114085600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:114084200-114085600	Enhancers	NH-A	brain
30	chr6:114084200-114085600	Enhancers	NHDF-Ad	bronchial
31	chr6:114084200-114095800	Weak transcription	Fetal Lung	lung

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