Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13193860	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13200525	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13201785	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13207760	0.84[AMR][1000 genomes]
rs13209808	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13220044	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17789266	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2695454	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34206951	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34736881	0.84[AMR][1000 genomes]
rs34753135	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34832025	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34950886	0.84[AMR][1000 genomes]
rs35409527	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35470926	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35542449	0.84[AMR][1000 genomes]
rs35902942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36000791	0.84[AMR][1000 genomes]
rs62417365	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66794022	0.84[AMR][1000 genomes]
rs71541084	0.84[AMR][1000 genomes]
rs72960759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv464023	chr6:114071720-114114057	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv604532	chr6:114071720-114114057	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114097800-114099000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:114098000-114099000	Enhancers	Brain Hippocampus Middle	brain
3	chr6:114098000-114099200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:114098200-114099400	Enhancers	Fetal Intestine Large	intestine
5	chr6:114098400-114099000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:114098400-114099000	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:114098400-114099400	Enhancers	Fetal Intestine Small	intestine
8	chr6:114098600-114099000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
9	chr6:114098600-114099200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr6:114098600-114099600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:114098800-114099000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr6:114098800-114099000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
13	chr6:114098800-114099000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr6:114098800-114099200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr6:114098800-114099200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr6:114098800-114099200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr6:114098800-114099600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
18	chr6:114098800-114099800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr6:114098800-114105400	Weak transcription	Stomach Mucosa	stomach

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