Variant report

Variant	rs13193860
Chromosome Location	chr6:114149335-114149336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13200525	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204232	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13207760	0.81[AMR][1000 genomes]
rs13209808	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13220044	0.81[AMR][1000 genomes]
rs17789266	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695454	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34206951	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34736881	0.81[AMR][1000 genomes]
rs34753135	0.81[AMR][1000 genomes]
rs34832025	0.81[AMR][1000 genomes]
rs34950886	0.81[AMR][1000 genomes]
rs352081	0.88[ASN][1000 genomes]
rs352082	0.85[ASN][1000 genomes]
rs35409527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35470926	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35542449	0.81[AMR][1000 genomes]
rs35902942	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36000791	0.81[AMR][1000 genomes]
rs62417365	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66794022	0.81[AMR][1000 genomes]
rs71541084	0.81[AMR][1000 genomes]
rs72960759	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114141400-114150200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:114147200-114150200	Weak transcription	Pancreas	Pancrea
3	chr6:114147400-114150000	Weak transcription	Psoas Muscle	Psoas
4	chr6:114147400-114150000	Weak transcription	HSMMtube	muscle
5	chr6:114147400-114150200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:114147400-114150400	Weak transcription	NH-A	brain
7	chr6:114147400-114150600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:114147400-114151000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:114147400-114151000	Weak transcription	Small Intestine	intestine
10	chr6:114147400-114154800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:114147600-114150000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:114147600-114150200	Weak transcription	Brain Anterior Caudate	brain
13	chr6:114147600-114150400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:114147600-114150600	Weak transcription	Osteobl	bone
15	chr6:114147600-114154400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:114147800-114150000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:114147800-114150000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:114147800-114150200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:114147800-114150200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:114147800-114150400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:114147800-114151000	Weak transcription	Adipose Nuclei	Adipose
22	chr6:114148000-114149800	Weak transcription	HSMM	muscle
23	chr6:114148200-114150400	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:114149200-114149400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:114149200-114149600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:114149200-114149600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:114149200-114151400	Weak transcription	Primary monocytes fromperipheralblood	blood

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