Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114091896..114093988-chr6:114177482..114179843,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13193860	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13200525	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13201785	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13204232	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13207760	0.80[ASN][1000 genomes]
rs13208937	0.80[ASN][1000 genomes]
rs13209808	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13220044	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17789266	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2695454	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34206951	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34753135	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34832025	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34950886	0.82[ASN][1000 genomes]
rs35409527	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35470926	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35542449	0.80[ASN][1000 genomes]
rs35902942	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36000791	0.80[ASN][1000 genomes]
rs66794022	0.82[ASN][1000 genomes]
rs71541084	0.80[ASN][1000 genomes]
rs72960759	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv464023	chr6:114071720-114114057	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv604532	chr6:114071720-114114057	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114084200-114095800	Weak transcription	Fetal Lung	lung
2	chr6:114085400-114098000	Weak transcription	Stomach Mucosa	stomach

Quick Search: