Variant report

Variant	rs34753135
Chromosome Location	chr6:114085548-114085549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:114079000..114080556-chr6:114084506..114086465,2	K562	blood:
2	chr6:114084994..114086741-chr6:114178527..114180154,2	MCF-7	breast:
3	chr6:114017203..114020038-chr6:114083854..114086336,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13193860	0.81[AMR][1000 genomes]
rs13200525	0.84[AMR][1000 genomes]
rs13201785	0.81[AMR][1000 genomes]
rs13204232	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13207760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13208937	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13209808	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13220044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17789266	0.84[AMR][1000 genomes]
rs2695454	0.81[AMR][1000 genomes]
rs34206951	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs34736881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34832025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34950886	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35384158	0.91[ASN][1000 genomes]
rs35409527	0.81[AMR][1000 genomes]
rs35470926	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs35542449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35902942	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36000791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62417365	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66794022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71541084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72960759	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv464023	chr6:114071720-114114057	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv604532	chr6:114071720-114114057	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114083000-114086000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:114083600-114085600	Enhancers	HUVEC	blood vessel
3	chr6:114083800-114085600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:114083800-114085600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:114083800-114085600	Enhancers	HMEC	breast
6	chr6:114083800-114085600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:114083800-114085600	Enhancers	Osteobl	bone
8	chr6:114084000-114085600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:114084000-114085600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:114084000-114085600	Enhancers	Placenta	Placenta
11	chr6:114084200-114085600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr6:114084200-114085600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:114084200-114085600	Enhancers	NH-A	brain
14	chr6:114084200-114085600	Enhancers	NHDF-Ad	bronchial
15	chr6:114084200-114095800	Weak transcription	Fetal Lung	lung
16	chr6:114084600-114085600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:114084800-114085600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:114085200-114085600	Enhancers	NHEK	skin
19	chr6:114085400-114085600	Enhancers	GM12878-XiMat	blood
20	chr6:114085400-114098000	Weak transcription	Stomach Mucosa	stomach

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