Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13193860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200525	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204232	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13207760	0.81[AMR][1000 genomes]
rs13209808	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13220044	0.81[AMR][1000 genomes]
rs17789266	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695454	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34206951	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34736881	0.81[AMR][1000 genomes]
rs34753135	0.81[AMR][1000 genomes]
rs34832025	0.81[AMR][1000 genomes]
rs34950886	0.81[AMR][1000 genomes]
rs352081	0.88[ASN][1000 genomes]
rs352082	0.85[ASN][1000 genomes]
rs35470926	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35542449	0.81[AMR][1000 genomes]
rs35902942	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36000791	0.81[AMR][1000 genomes]
rs62417365	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66794022	0.81[AMR][1000 genomes]
rs71541084	0.81[AMR][1000 genomes]
rs72960759	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114134600-114146400	Weak transcription	Stomach Mucosa	stomach
2	chr6:114135600-114142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:114135600-114145600	Weak transcription	HSMM	muscle
4	chr6:114139400-114141400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:114139400-114143800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:114140200-114145400	Weak transcription	Fetal Lung	lung
7	chr6:114140400-114142400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:114140600-114142000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:114140800-114141400	Enhancers	Fetal Intestine Large	intestine
10	chr6:114141000-114141600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr6:114141000-114145000	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:114141200-114141400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr6:114141200-114145800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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