Variant report

Variant	rs35902942
Chromosome Location	chr6:114095996-114095997
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13193860	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13200525	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13201785	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13204232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13207760	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13208937	0.80[ASN][1000 genomes]
rs13209808	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13220044	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17789266	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2695454	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34206951	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34736881	0.84[AMR][1000 genomes]
rs34753135	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34832025	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34950886	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35409527	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35470926	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35542449	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs36000791	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62417365	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66794022	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs71541084	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72960759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv464023	chr6:114071720-114114057	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv604532	chr6:114071720-114114057	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114085400-114098000	Weak transcription	Stomach Mucosa	stomach
2	chr6:114093800-114096200	Enhancers	NHDF-Ad	bronchial
3	chr6:114094000-114096600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:114094000-114098800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:114094200-114096200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:114095000-114096200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:114095000-114096400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:114095200-114096000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:114095200-114096000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:114095200-114096200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:114095200-114096400	Enhancers	Osteobl	bone
12	chr6:114095400-114096200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:114095600-114096000	Enhancers	Primary B cells from cord blood	blood
14	chr6:114095600-114096200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:114095600-114096400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:114095800-114096000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:114095800-114096000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:114095800-114096000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr6:114095800-114096000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:114095800-114096000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
21	chr6:114095800-114096000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
22	chr6:114095800-114096200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:114095800-114096200	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:114095800-114096200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:114095800-114096200	Enhancers	Fetal Lung	lung

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