Variant report

Variant	rs1322760
Chromosome Location	chr6:72040511-72040512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:72040400-72040562	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72039083..72041745-chr6:72052272..72053919,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232295	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1407595	0.82[EUR][1000 genomes]
rs1885676	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1885677	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs4706482	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4707906	0.84[CEU][hapmap]
rs4707908	0.82[EUR][1000 genomes]
rs4707911	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902228	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6907281	0.83[CEU][hapmap]
rs7753063	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs828633	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828648	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828649	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828650	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs828651	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828652	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs866142	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs873864	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9346458	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs9354987	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs9354991	0.88[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:72018000-72043200	Weak transcription	HSMM	muscle
5	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
6	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
7	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
9	chr6:72033800-72046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
11	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:72034400-72052000	Weak transcription	Adipose Nuclei	Adipose
13	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
14	chr6:72036600-72043400	Weak transcription	A549	lung
15	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung
16	chr6:72036800-72043200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:72037400-72042600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:72037600-72040600	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:72037600-72042400	Weak transcription	NHDF-Ad	bronchial
20	chr6:72037600-72042800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:72039200-72040800	Weak transcription	Brain Anterior Caudate	brain
22	chr6:72039200-72047800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:72039400-72044600	Weak transcription	Fetal Kidney	kidney
24	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
25	chr6:72039600-72042400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:72040400-72040600	Genic enhancers	Lung	lung

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