Variant report

Variant	rs873864
Chromosome Location	chr6:72023252-72023253
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71997812..71999868-chr6:72020711..72023495,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119900	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10945296	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1322760	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1407595	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1885676	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1885677	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4585521	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4706482	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707905	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4707906	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4707908	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707911	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6902228	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6902283	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6907281	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6914937	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7750270	0.85[ASN][1000 genomes]
rs7753063	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828633	0.83[EUR][1000 genomes]
rs828648	0.82[EUR][1000 genomes]
rs828649	0.82[EUR][1000 genomes]
rs828652	0.82[EUR][1000 genomes]
rs9346454	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9346458	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354987	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354991	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
3	chr6:72004200-72030600	Weak transcription	Lung	lung
4	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:72004400-72030800	Weak transcription	Pancreas	Pancrea
6	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:72009800-72025800	Weak transcription	Hela-S3	cervix
8	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
9	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:72018000-72043200	Weak transcription	HSMM	muscle
14	chr6:72018600-72030800	Weak transcription	Placenta	Placenta
15	chr6:72019200-72026400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
17	chr6:72021600-72024000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:72022200-72023400	Weak transcription	Psoas Muscle	Psoas
19	chr6:72022200-72031200	Weak transcription	Left Ventricle	heart
20	chr6:72023200-72023400	Enhancers	Right Atrium	heart
21	chr6:72023200-72031200	Weak transcription	Liver	Liver

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