Variant report

Variant	rs4707911
Chromosome Location	chr6:72035239-72035240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OGFRL1-5	chr6:72034856-72035245	NONHSAT113489

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1322760	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407595	0.82[EUR][1000 genomes]
rs1885676	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1885677	0.80[EUR][1000 genomes]
rs4706482	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4707908	0.82[EUR][1000 genomes]
rs6902228	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7753063	0.82[EUR][1000 genomes]
rs828633	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828648	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828649	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828650	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs828651	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828652	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs866142	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs873864	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9346458	0.82[EUR][1000 genomes]
rs9354987	0.82[EUR][1000 genomes]
rs9354991	0.89[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
2	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
5	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:72018000-72043200	Weak transcription	HSMM	muscle
9	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
10	chr6:72026800-72035800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:72031400-72036000	Weak transcription	Fetal Lung	lung
12	chr6:72031600-72040400	Weak transcription	Lung	lung
13	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
14	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
16	chr6:72033800-72037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:72033800-72046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:72034000-72036400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
20	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:72034400-72052000	Weak transcription	Adipose Nuclei	Adipose
22	chr6:72034600-72035800	Weak transcription	NHDF-Ad	bronchial
23	chr6:72034600-72037400	Weak transcription	Spleen	Spleen
24	chr6:72034800-72036000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:72034800-72037200	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:72034800-72037400	Weak transcription	Right Ventricle	heart
27	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart

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