Variant report

Variant	rs828633
Chromosome Location	chr6:72045901-72045902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1322760	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407595	0.82[EUR][1000 genomes]
rs1885676	0.96[EUR][1000 genomes]
rs4706482	0.83[EUR][1000 genomes]
rs4707908	0.82[EUR][1000 genomes]
rs4707911	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902228	0.89[EUR][1000 genomes]
rs7753063	0.82[EUR][1000 genomes]
rs828648	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828650	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs828651	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828652	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs866142	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs873864	0.83[EUR][1000 genomes]
rs9346458	0.82[EUR][1000 genomes]
rs9354987	0.82[EUR][1000 genomes]
rs9354991	0.88[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
2	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
4	chr6:72033800-72046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
6	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:72034400-72052000	Weak transcription	Adipose Nuclei	Adipose
8	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
9	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung
10	chr6:72039200-72047800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
12	chr6:72040600-72056600	Weak transcription	Lung	lung
13	chr6:72043400-72060200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:72044000-72052000	Weak transcription	HSMMtube	muscle
15	chr6:72044200-72059400	Weak transcription	NH-A	brain
16	chr6:72044400-72060800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:72044600-72053200	Weak transcription	HSMM	muscle
18	chr6:72044800-72046000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:72044800-72059000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:72044800-72059200	Weak transcription	HUVEC	blood vessel
21	chr6:72044800-72060000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:72045000-72059000	Weak transcription	Osteobl	bone
23	chr6:72045600-72047600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:72045600-72052200	Weak transcription	NHDF-Ad	bronchial
25	chr6:72045600-72053200	Weak transcription	Fetal Kidney	kidney
26	chr6:72045800-72046000	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr6:72045800-72051600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:72045800-72072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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