Variant report

Variant	rs1885676
Chromosome Location	chr6:72033126-72033127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1322760	0.96[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1407595	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1885677	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4585521	0.81[ASN][1000 genomes]
rs4706482	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707905	0.81[ASN][1000 genomes]
rs4707906	0.88[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4707908	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707911	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6902228	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6902283	0.84[ASN][1000 genomes]
rs6907281	0.88[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.85[ASN][1000 genomes]
rs6914937	0.84[ASN][1000 genomes]
rs7750270	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7753063	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs828633	0.96[EUR][1000 genomes]
rs828648	0.95[EUR][1000 genomes]
rs828649	0.95[EUR][1000 genomes]
rs828650	0.91[EUR][1000 genomes]
rs828651	0.92[EUR][1000 genomes]
rs828652	0.95[EUR][1000 genomes]
rs866142	0.87[EUR][1000 genomes]
rs873864	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9346454	0.85[ASN][1000 genomes]
rs9346458	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9354987	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9354991	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1885676	OGFRL1	cis	cerebellum	SCAN
rs1885676	MTO1	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
3	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
6	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:72018000-72043200	Weak transcription	HSMM	muscle
11	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
12	chr6:72026800-72035800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:72029400-72033800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:72030000-72033600	Weak transcription	Psoas Muscle	Psoas
15	chr6:72030000-72033600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:72031400-72033600	Weak transcription	Adipose Nuclei	Adipose
17	chr6:72031400-72036000	Weak transcription	Fetal Lung	lung
18	chr6:72031600-72033600	Weak transcription	Left Ventricle	heart
19	chr6:72031600-72040400	Weak transcription	Lung	lung
20	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
21	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea

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